PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_40437_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 179aa MW: 19594.2 Da PI: 10.3827

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_40437_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.9	3.6e-32	94	151	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs+fpr+YY+C+s gCp++k+ver+ +dp+++++tYegeH+h+ Cotton_A_40437_BGI-A2_v1.0 94 DEYSWRKYGQKPIKGSPFPRGYYKCSSVrGCPARKHVERAPDDPSMLIVTYEGEHRHT 151 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.1E-18	41	90	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.0E-33	81	153	IPR003657	WRKY domain
PROSITE profile	PS50811	31.009	87	153	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-27	90	153	IPR003657	WRKY domain
SMART	SM00774	3.5E-38	92	152	IPR003657	WRKY domain
Pfam	PF03106	1.8E-27	94	150	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MSSAITGDGS VSNGKQGSSL FLAPALAVST GKPPLSSTPF KKRCHEHDHS DNVSSKISGS 60 GNSKCHCSKR RKNRVKKVIR VPAISSKIAD IPPDEYSWRK YGQKPIKGSP FPRGYYKCSS 120 VRGCPARKHV ERAPDDPSML IVTYEGEHRH TQPAMQENMA PAAGMDWSSS QRDNKQISI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-23	80	153	2	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ828074	0.0	HQ828074.1 Gossypium hirsutum WRKY11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016683198.1	1e-126	PREDICTED: probable WRKY transcription factor 17
Refseq	XP_016753275.1	1e-126	PREDICTED: probable WRKY transcription factor 17
Swissprot	Q9SJA8	2e-84	WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBL	M9MUX6	1e-128	M9MUX6_GOSHI; WRKY11
STRING	Gorai.010G121800.1	1e-125	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2508	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24570.1	3e-78	WRKY DNA-binding protein 17

Publications ? help Back to Top
Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]