PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40508_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 486aa    MW: 52770.2 Da    PI: 6.131
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40508_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30189248159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+++d +++++tYeg+Hnh+
  Cotton_A_40508_BGI-A2_v1.0 189 MNDGCQWRKYGQKIAKGNPCPRAYYRCTLSpTCPVRKQVQRCSDDMSILITTYEGNHNHP 248
                                 58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-32174250IPR003657WRKY domain
SuperFamilySSF1182901.96E-27181250IPR003657WRKY domain
PROSITE profilePS5081128.828184250IPR003657WRKY domain
SMARTSM007742.2E-36189249IPR003657WRKY domain
PfamPF031066.4E-27190248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGEVKKENER LKLLLCQIVK DYQSLHTRFL DVLKKEDANK STTTPIVGSH EENNEEHHQL  60
ISLSLGRSSS NDPPKKQEKK SSKEDDDDDD DDDDDDDGKH GNDGGGLELG LECKFEPDGS  120
IEPEKNNNPS CESSLGKPEE EEEKEPTEVW PPSKILKSVK NGDEEDVSEP MQLKKTRVSV  180
RTRCDTPTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTLSPT CPVRKQVQRC SDDMSILITT  240
YEGNHNHPLP LSATAMASTT SAAASMLHSE SSTSQPALPT SLSAPTASLS TSTTHLHALS  300
FNFSQNPTPS HHYHFPNSSI STLNSHPTVT LDLTAPPPPH NNNPSYFSRL SNLPTYSSSS  360
SSCLNWKKTS SHLTFGGPLN NYPAIRQSPP YMQITNHQAL SETLTAAATK AITSNPSFCS  420
ALAAALTSFV GNNGSGGGTA SELGFASSSY LQGKKPSSMV NPHQQQKQGS LLLFPPSNTA  480
SDPPAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22176250174WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147181e-172JX614718.1 Gossypium hirsutum clone NBRI_GE58314 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648484.10.0PREDICTED: probable WRKY transcription factor 61 isoform X1
TrEMBLA0A0D2TXH70.0A0A0D2TXH7_GOSRA; Uncharacterized protein
STRINGGorai.013G082300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2244145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.11e-52WRKY DNA-binding protein 61