PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40609_BGI-A2_v1.0
Common NameF383_29408
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 221aa    MW: 24453.4 Da    PI: 9.5173
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40609_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.31.3e-322104199
                                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                 f+k ltpsdv+k++rlv+pk++ae++    + ++ ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+
  Cotton_A_40609_BGI-A2_v1.0   2 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgSDSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDI 84 
                                 99***************************9445557889******************************************** PP

                                 EEEEE-SSSEE..EEEEE-S CS
                          B3  80 vvFkldgrsefelvvkvfrk 99 
                                 ++F+++++++ +l+++++r+
  Cotton_A_40609_BGI-A2_v1.0  85 ILFQRHRTDGDRLFIGWRRR 104
                                 ****98889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-291103IPR015300DNA-binding pseudobarrel domain
CDDcd100174.66E-28194No hitNo description
Gene3DG3DSA:2.40.330.101.6E-401106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.1422105IPR003340B3 DNA binding domain
SMARTSM010197.5E-262105IPR003340B3 DNA binding domain
PfamPF023621.0E-292104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MFEKPLTPSD VGKLNRLVIP KQHAEKYFPL GSDSSDKGLL LSFEDESGKC WRFRYSYWNS  60
SQSYVLTKGW SRYVKEKQLD AGDIILFQRH RTDGDRLFIG WRRRGAAVVV APAATDGGNA  120
VMENNGGGGG GGNGGWSNRR LYRRYPHLGH IQGLEANVPY QPDCIHTGSI VQNQATAAGN  180
PKRLVRLFGV NLECHQLDES PPSTPASSMV SSQGPTAHQF Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-5111047113B3 domain-containing transcription factor NGA1
5os9_B2e-5111047113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613293.11e-165PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI32e-66Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A0B0MQJ11e-164A0A0B0MQJ1_GOSAR; Uncharacterized protein
STRINGGorai.009G399000.11e-137(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.23e-61B3 family protein