PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40699_BGI-A2_v1.0
Common NameF383_33608
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 313aa    MW: 35382.4 Da    PI: 8.4002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40699_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171763147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                rg+WT+eEd++l  +++q+G g+W + +++ g++R++k+c++rw +y
  Cotton_A_40699_BGI-A2_v1.0 17 RGPWTAEEDQILMAYIQQHGHGNWCALPEKAGLKRCGKSCRLRWINY 63
                                89*******************************************99 PP
2Myb_DNA-binding48.52e-1570115148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg+++ +E+  +++++++lG++ W++ a++++ +Rt++++k++w+++l
  Cotton_A_40699_BGI-A2_v1.0  70 RGKFSLQEEHTIIQLHALLGNR-WSAMAAHLP-KRTDNEIKNYWNTHL 115
                                 89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9451264IPR017930Myb domain
SuperFamilySSF466892.7E-2914111IPR009057Homeodomain-like
SMARTSM007172.5E-141666IPR001005SANT/Myb domain
PfamPF002495.3E-151763IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-241871IPR009057Homeodomain-like
CDDcd001673.51E-111964No hitNo description
PROSITE profilePS5129423.26465119IPR017930Myb domain
SMARTSM007173.3E-1469117IPR001005SANT/Myb domain
PfamPF002498.1E-1570115IPR001005SANT/Myb domain
CDDcd001671.23E-972115No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2572120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRRLPLNGH KEVGLKRGPW TAEEDQILMA YIQQHGHGNW CALPEKAGLK RCGKSCRLRW  60
INYVRPDIKR GKFSLQEEHT IIQLHALLGN RWSAMAAHLP KRTDNEIKNY WNTHLKKRLI  120
KLGVDPMTHK PRTDAASFPS GSNLTHMAQW ESARLEAEAR LVRGSKQVVP NPIHPKNHLT  180
LNHSQLRPRC LDVLKAWQGV VAGMFAFPTQ DLGSPTSTLR LPAIGLNATS YTDCEMGFDD  240
SLKYIENSNQ MKEIEETITD GCIDEWFEDS FRVGNYESVP MAVDGSNCCG SVFDLVNSSP  300
YGLSMLYDHN VMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24151195108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362831e-57AF336283.1 Gossypium hirsutum GHMYB25 (ghmyb25) mRNA, complete cds.
GenBankEU8264651e-57EU826465.1 Gossypium hirsutum cultivar Acala Maxxa R2R3 MYB transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617611.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9LE637e-84MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0B0N4W70.0A0A0B0N4W7_GOSAR; Transcription factor MYB39-like protein
STRINGGorai.013G088200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2244245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.19e-86myb domain protein 16