PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_40947_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 125aa MW: 14685.5 Da PI: 4.3834

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_40947_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	76	8.7e-24	4	90	1	81
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk 79 +ppGfrF Pt+eelv++yL + +egk+ l++++vi+ vdiy+++PwdLp ++ + ++w+fF++r++++a+g+r++r t+ Cotton_A_40947_BGI-A2_v1.0 4 MPPGFRFYPTEEELVSFYLYNMLEGKQedlnaLSINRVIPVVDIYEFNPWDLPpYLCHRDPEQWFFFIPRKESEARGERPKRLTD 88 79***********************88777777779**********9666677788******************998 PP NAM 80 sg 81 +g Cotton_A_40947_BGI-A2_v1.0 89 TG 90 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-28	3	111	IPR003441	NAC domain
PROSITE profile	PS51005	23.089	4	125	IPR003441	NAC domain
Pfam	PF02365	2.1E-10	5	103	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MEDMPPGFRF YPTEEELVSF YLYNMLEGKQ EDLNALSINR VIPVVDIYEF NPWDLPPYLC 60 HRDPEQWFFF IPRKESEARG ERPKRLTDTG APNGRKTEWK MNEYKAFEGQ VSSDSAANSE 120 QLPTV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-15	4	108	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-15	4	108	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-15	4	108	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-15	4	108	17	144	NO APICAL MERISTEM PROTEIN
4dul_A	2e-15	4	108	17	144	NAC domain-containing protein 19
4dul_B	2e-15	4	108	17	144	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022766085.1	3e-57	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-33	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2P5WED9	1e-60	A0A2P5WED9_GOSBA; Uncharacterized protein
STRING	EOY08332	4e-56	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-36	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]