PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_41147_BGI-A2_v1.0
Common NameF383_19823
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 519aa    MW: 57415.8 Da    PI: 8.2351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_41147_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.9e-1359113148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                                 +g WT+eEde l +av+ + g++Wk+Ia  +          R++ qc +rwqk+l
  Cotton_A_41147_BGI-A2_v1.0  59 KGGWTPEEDETLRNAVAAFKGKSWKKIALAFAygaaeffPDRSEVQCLHRWQKVL 113
                                 688****************************999*****9************986 PP
2Myb_DNA-binding57.63e-18119165148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g+WT+ Ed++++++v ++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Cotton_A_41147_BGI-A2_v1.0 119 KGPWTQKEDDKIIELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 165
                                 79******************************.*************97 PP
3Myb_DNA-binding52.41.2e-16171214146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Cotton_A_41147_BGI-A2_v1.0 171 KDAWTMEEELALMNAHRTYGNK-WAEIAKVLP-GRTDNAIKNHWNS 214
                                 679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.55254113IPR017930Myb domain
SMARTSM007173.9E-1158115IPR001005SANT/Myb domain
PfamPF002491.4E-1159113IPR001005SANT/Myb domain
SuperFamilySSF466899.33E-1460123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-1961125IPR009057Homeodomain-like
CDDcd001673.58E-1062113No hitNo description
PROSITE profilePS5129431.635114169IPR017930Myb domain
SuperFamilySSF466891.54E-31116212IPR009057Homeodomain-like
SMARTSM007172.4E-17118167IPR001005SANT/Myb domain
PfamPF002498.8E-18119165IPR001005SANT/Myb domain
CDDcd001675.04E-15121165No hitNo description
Gene3DG3DSA:1.10.10.606.8E-27126171IPR009057Homeodomain-like
PROSITE profilePS5129421.801170220IPR017930Myb domain
SMARTSM007172.9E-15170218IPR001005SANT/Myb domain
PfamPF002494.3E-15171214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-23172220IPR009057Homeodomain-like
CDDcd001671.72E-11173216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAELRLEERC LYKKQLTTAS SSSVSEGGGN AVVKSPGVSS PAPTSPNHRR TTGPIRRAKG  60
GWTPEEDETL RNAVAAFKGK SWKKIALAFA YGAAEFFPDR SEVQCLHRWQ KVLNPDLVKG  120
PWTQKEDDKI IELVSKYGPT KWSVIAKSLP GRIGKQCRER WHNHLNPDIK KDAWTMEEEL  180
ALMNAHRTYG NKWAEIAKVL PGRTDNAIKN HWNSSLKKKL DFYLATGKLP PVSKNGLQNV  240
TKDIRTPTTQ NFLVCLKKES GSTAQTSSGT TDTCKLEEDG KDQLESSAPV QDMTASTNFI  300
PEEPTDTEST ECKLQSVDIN LCCCTSESGG KFGSHRISSQ VVEDKVLKEQ VGLDTPTYCS  360
LCCDESPRSQ HEWTSTPITS PISFFTPPCV KGSGLSIHSP EYILRIAAKS FLNTPSIFRK  420
RKMGAQVLTL PNKKGKLNEE IGKDGIQLSG EQERTENSSE QAQFCDGDPC ESPACQGDSP  480
TLPNSTVFNV SPPYRLRSNR TAVLKSVERQ LELTFDKEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-67582205159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-67582205159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442444.10.0PREDICTED: myb-related protein A-like
RefseqXP_012442451.10.0PREDICTED: myb-related protein A-like
SwissprotQ8H1P91e-153MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A0B0NHP10.0A0A0B0NHP1_GOSAR; MYB3R-1: Myb-related protein 3R-1
STRINGGorai.001G249400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-148myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]