PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_41187_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 150aa MW: 16712.5 Da PI: 9.1034

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_41187_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Cotton_A_41187_BGI-A2_v1.0 42 FSCNYCKRKFYSSQALGGHQNAH 64 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.75E-6	40	69	No hit	No description
PROSITE profile	PS50157	11.074	42	69	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MDYQPNTSLR LSLSNNQPNL ELVLEPSSSS LSPHSPAAPR IFSCNYCKRK FYSSQALGGH 60 QNAHKLERTL AKKSRELSSV VRAHGGSSIS GSSHDQRIQS PMATFEQHGR AGRFTGEMSY 120 GRTDVNYSSM GYRNENVEDE FSQLDLSLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269\|PubMed:18192438}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633242.1	1e-108	PREDICTED: zinc finger protein 2-like
Refseq	XP_017633243.1	1e-108	PREDICTED: zinc finger protein 2-like
Swissprot	Q39261	9e-33	ZFP2_ARATH; Zinc finger protein 2
TrEMBL	A0A1U8MU12	1e-105	A0A1U8MU12_GOSHI; zinc finger protein 2-like
TrEMBL	A0A2P5XIJ3	1e-105	A0A2P5XIJ3_GOSBA; Uncharacterized protein
STRING	Gorai.004G100800.1	4e-97	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6621	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	6e-26	zinc finger protein 2