PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre02.g091550.t1.2
Common NameCHLREDRAFT_186648
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family Whirly
Protein Properties Length: 239aa    MW: 24873.3 Da    PI: 10.1021
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre02.g091550.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly68.99e-22802222137
              Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanata.............erkydWekkqsfalsatevaelvd...laskescef 76 
                         vykt+aa+ +    ptf + ++g+ +l+r+G++lle+a a a             +r+y+W++k +fals+ e+++++    +as +   +
  Cre02.g091550.t1.2  80 VYKTRAAMCLRLLPPTFAKAQAGK-VLERDGTMLLEFATANAaapgagsgpagnvNRTYNWGNKVTFALSPVELGNILAgdaVASDKGLVL 169
                         8*****************998776.79**********8664322333344444445*******************9874458999999*** PP

              Whirly  77 fhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                         +hdpa+  +++G+  k l+++ lpdG   f nl+       g e+fsvPv+k+ef v++s+
  Cre02.g091550.t1.2 170 WHDPAKL-GKTGEPIKKLSLKQLPDGNISF-NLT------AGPENFSVPVTKGEFEVIKSV 222
                         ****865.578888899*********7443.444......56889*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.107.4E-5168238IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.43E-1971236IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.2E-4080222IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0005739Cellular Componentmitochondrion
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLLSRLAHSA LPASLRASAA SSASSQLHAV PRVASAAPRA PSHVAQYSNG SAAPVPPNFA  60
APNDRAATSS SDRVYTNYYV YKTRAAMCLR LLPPTFAKAQ AGKVLERDGT MLLEFATANA  120
AAPGAGSGPA GNVNRTYNWG NKVTFALSPV ELGNILAGDA VASDKGLVLW HDPAKLGKTG  180
EPIKKLSLKQ LPDGNISFNL TAGPENFSVP VTKGEFEVIK SVAQFAIPRL LGFDAVFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koq_A1e-18672352163Single-stranded DNA-binding protein WHY3, chloroplastic
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.138090.0normal conditions| nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre02.g091550.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0573890.0LC057389.1 Chlamydomonas reinhardtii gene for hypothetical protein, complete cds, strain: CreWhirly.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001701785.11e-172transcription factor
TrEMBLA8I9A11e-171A8I9A1_CHLRE; Transcription factor
STRINGEDP067601e-172(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Representative plantOGRP23161635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-19WHIRLY 2
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]