PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g145407.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 2140aa    MW: 216981 Da    PI: 7.5862
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g145407.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-0819471968325
                          S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH    3 telCrffartGtCkyGdrCkFaH 25  
                           + Crff++ G+C+ G+rC+FaH
  Cre03.g145407.t1.1 1947 SRVCRFFLQ-GFCRDGERCRFAH 1968
                          589******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002042.24E-5204250No hitNo description
PROSITE profilePS5029711.665204244IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.9E-6204250IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0022204233IPR002110Ankyrin repeat
PROSITE profilePS5008811.033204236IPR002110Ankyrin repeat
SuperFamilySSF484033.42E-6204250IPR020683Ankyrin repeat-containing domain
SMARTSM003567.7E-619441970IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.87319441971IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-619471968IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-619471969IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-619481969IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2140 aa     Download sequence    Send to blast
MESSGVPPGN GACGTASPSN ADGTYGSRKS RMERLDKSQT LSATLDSEDR RVKELTEGIL  60
YDFLPAALNV MLPRCEDPLQ ELDADRCRAV ASAALAVSAL MNAPPGFLEF LLCVPWRKLS  120
QLYPKSDSID KLVSNLQVTD EERRKLVNTR IEPALMGSVL DFLYKEKHLD SVPPMLQLTP  180
VNPLQPEDKS APVVVRETVA AVLDGATPLH CAALRGNPAQ VDHLLYCGAD PTLMTAAGEL  240
PIELVPMCGD RSAGASTAAA AEGSAGGSST GAAVRKCRCM GPHDQEVWEC RSRLARSLIA  300
RRCFFSFGVG LFSWVKLMVF CLLCLLGYAG CYNSISRPTV ERHIDTRRQQ KVAAARARAH  360
ALVTRMRSEA ETGHKHLEQA KRECLESAAF QKGPPDITQM RFTDPTKSPL PPPPQINQIH  420
DINFHLQESG TSSTGEELAS EKAFKCFVRS VHALQSLDLH GDTVPQVFAE LVQAGGAESR  480
ETHVLEDEQA DLYSCWAESV LLKFRGCTCP GCAALAIQAV RMAHIQATRL FGKVDRVKQT  540
HADRWRAVGQ ALARVVYVHI CLLLETEAQA SPTRSLVWRA EQCLREWDRL EKAGLTQGAG  600
VLDPRHVSAL QLWAKTADSD LYLAEALHGQ SLPPTKTLQE VVLGAVSYTE EGLPLLARPV  660
NAEVVAGLEH ALTLAGLPSP LLAHIVRSVV ANASAELAAA ARLRELVGGK AGGGGAAPGG  720
AGAGGSGTAD AVAALSDALR AAEPYRTRLG PEVDAALELR SKWTQRASAV EKLEGAVEEV  780
RGYTLAQPLS FSTGAEGGAG PGAGSDAAAA AAASAPDLVE WDRRMKQLET AMNEAKDANV  840
SVTKAKRLHK EMAAVAAAAE ASRQLELVMS RRPSGPAQLK QALNKAESAL SSLSGLGGPP  900
VPGASDVLGP LVASARRRLD TERAAEALSK AAASYRSLAD LARLEAAIYN AKKIGAEELD  960
PESYRTSLEL RAQLQEAARA RSGLETALRN LQNQLRPEDA EALERALQDA TKWEELLSGD  1020
TAKARKALEQ WRSMTVSDAK LARLLREGAS PAVLAKAIQE AAASGVKVQN AKRVLKLMQT  1080
LEAALGGTAV DGGAAERHAA IKSRLEAAEA GGVTAGPLPE AARQALARLE AEVAREALEA  1140
ALKPHSDWAM AHRISVLREA LDKAEGIVGS GKAEANGDTA PASKQANGSA GGKGGRGKRS  1200
SGGSSSASSA AGEASGSGGA AAAGPSPAPA GLVDESALTA VRELVQRARQ VLAEDQAELA  1260
RIERERQEAE RARKEALERE RLERLKQEQE RQKREKAEAA ERERLQAEKR EKAKAEKTRQ  1320
QQQAQQQAQQ AAQQKASAAA AAAASDKSAA AVGKGAAAGK GAKGSASAAG AGGRGAGGGK  1380
GAPSAAAGAS GKAENAAHGR AQKQQQSSHN AQAAATAAAA ASAPAPAAAA AATASTASMS  1440
AAVAAAVHTR GDSLDSLGEV VHKLNRDVIK ALDLDMDVET SGSSDRGSVA VGGVAGGGGV  1500
LVSMAGTAGG VSRADGGSSF GRCGSGAAAT TDGVADAVLT PSQRTSSIMS SIASADDVML  1560
LQSGGGSGNA GPSAGAAPGA GGVSLSTVSN GLATSAATGA DAAGLGQDAG AIGTAAGAGA  1620
ASNKPPRFGF VDLGGASWGL DSPLLSNAAG AAGLFPSLQS NMVGAEFGSI LSGGLAHKPG  1680
AGGAGGPDGW STAGAGSALG FGGIGHHGGG SQGTPLHSSL DDSAALMAAV LARHQQQLQQ  1740
QQQAAAAGAV GGMLMGGLTV NTGSMGVDAN GLALLSQGAL ASPSNRSTVS TSNAANMHGL  1800
MQVRPQPGAA SMMTGSAAGG GTTGRPSLQL AMPPSALAGQ ASADRASRAG FWTPPTFQGA  1860
GLDFTASADA LGGLGVTGAG GGMDWQQQQQ QPGLNVTGTT DLGGGLQMLH LPALSGLAGA  1920
PGSSLRGSLV GGVNAAAAPQ AGGASGSRVC RFFLQGFCRD GERCRFAHTT ALSPPTPGAA  1980
MGSAPSSAQA AAAAAANSAI GSFAFGAPGA EAFAPLGGGL GRNSTAGGGG EPMLRPGSVP  2040
GGGSMTSMAN GLALLERAHR NSQIAAAAAQ QQQLTALYGA GGAPPSPPSG RASVSGVSAA  2100
GGPPASTQQM VLALPDDLTF SPSSHPSTQG NGVLAPGHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
113711378GGRGAGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g145407.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001695726.10.0predicted protein
TrEMBLA0A2K3DVB80.0A0A2K3DVB8_CHLRE; Uncharacterized protein
STRINGEDP015130.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP816433