PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g152150.t1.2
Common NameCHLREDRAFT_149734
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C2H2
Protein Properties Length: 414aa    MW: 41014.8 Da    PI: 7.8614
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g152150.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06112135123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         + C+dC+++F ++  L+rH++  H
  Cre03.g152150.t1.2 112 FACGDCDRTFASQQGLRRHLQAkH 135
                         78*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035518426IPR015880Zinc finger, C2H2-like
PfamPF138942.4E-4112135No hitNo description
PROSITE profilePS5015710.949112140IPR007087Zinc finger, C2H2
SMARTSM003550.0018112135IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114135IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533249277IPR007087Zinc finger, C2H2
SMARTSM003550.17249272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280251272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MATNLCAECG IKLSRPEYQK HMQEVHGVSI QHDSDDERDK EAPAAGEDGA DAKPQRQRRR  60
GGNKEGAAEG AEGAEEGAAG EDGARPPRER RRRGGRKPAG EGADGEAPAG DFACGDCDRT  120
FASQQGLRRH LQAKHPESEA TAAAVAAAAA EAPAAGARRG GRGRGRGTKA EAGEGAADGA  180
AADGAEGAKP AAGGRSRGRG GRTGRGRGAA AAPVPDDPTA AAAMAAAAAK AAIGGAAAEP  240
AAERQVTLFR CKQCEQGFKS RNRAREHVIE AHAADVPAEA PAEAPGVKPP PPEGVELPPG  300
RRAPAPVVPV PADALLEVAE VTTKRAPRAS RRRKPRTANG DEPSGDAAEG EEGAAEGGRA  360
RGGRRGGRGG DAAAPAAGGD AAAASGDAPA PAGGAKRSGA PTDELAALGI TAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158166RGGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.115810.0normal conditions| nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g152150.t1.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001695654.10.0predicted protein
TrEMBLA8J2L00.0A8J2L0_CHLRE; Predicted protein
STRINGEDP014410.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1396822
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]