PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

Cre03.g193900.t1.2

Common Name

CHLREDRAFT_147364

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Protein Properties

Length: 232aa MW: 23961.2 Da PI: 9.2547

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre03.g193900.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	29	2.3e-09	96	162	18	84
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 +lP + ++k++ d+++++ sae ls a e+f+ + ++ a krrt++ d+++++ Cre03.g193900.t1.2 96 AASLPASWVRKVVNLDPEIQRCSAEGVLALSAAAEVFLSAVCAKATAAAAAGKRRTVRLDDMEKCIR 162 5789*********************************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50118	12.74	1	72	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.8E-14	2	67	IPR009071	High mobility group box domain
CDD	cd01390	8.38E-10	2	53	No hit	No description
SMART	SM00398	9.3E-7	2	73	IPR009071	High mobility group box domain
Pfam	PF00505	1.4E-11	2	68	IPR009071	High mobility group box domain
SuperFamily	SSF47095	1.31E-13	3	67	IPR009071	High mobility group box domain
SuperFamily	SSF47113	1.33E-11	91	163	IPR009072	Histone-fold
Pfam	PF00808	4.3E-8	97	161	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.6E-12	99	166	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MAPTAYMLFC NQHRESVRQR LAAEGQEKIA VTVVAKELGQ IWKALTEEEK AKYRAQAEEQ 60 KQQQQQQQAG DGSETQGEGN AEGGQRAGSP AKAAAAASLP ASWVRKVVNL DPEIQRCSAE 120 GVLALSAAAE VFLSAVCAKA TAAAAAGKRR TVRLDDMEKC IRGDKRLMAA GFTAVINMVS 180 AAAATEAEGK AAAVAAAGAP PGKKQKVDKA AAPAAGADKH NSIEKAFGMA S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre03.g193900.t1.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001693110.1	1e-158	predicted protein
TrEMBL	A0A2K3DYI1	1e-162	A0A2K3DYI1_CHLRE; Uncharacterized protein
STRING	EDP03136	1e-158	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4674	11	11

Link Out ? help Back to Top
Phytozome	Cre03.g193900.t1.2
Entrez Gene	5718711

Publications ? help Back to Top
Merchant SS, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science, 2007. 318(5848): p. 245-50 [PMID:17932292]