PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g197350.t1.2
Common NameCHLREDRAFT_129649
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 834aa    MW: 91689.2 Da    PI: 9.2115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g197350.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.5e-13853248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        g W   Ede+l+ av ++G ++W++I++ +  ++++kqck rw+ +l
  Cre03.g197350.t1.2  8 GVWKNTEDEILKAAVMKYGLNQWARISSLLV-RKSAKQCKARWYEWL 53
                        78*****************************.************986 PP
2Myb_DNA-binding30.77.4e-1060102247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           WT eEde+l+++ k+++   W+tIa  +g  Rt+ qc +r+  +
  Cre03.g197350.t1.2  60 TEWTREEDEKLLHLAKLMPCQ-WRTIAPIVG--RTPAQCLDRYERL 102
                         68*****************88.********8..*********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.564257IPR017930Myb domain
SMARTSM007172.1E-14655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-18960IPR009057Homeodomain-like
CDDcd001674.33E-121053No hitNo description
PfamPF139211.3E-121070No hitNo description
SuperFamilySSF466898.99E-2033107IPR009057Homeodomain-like
CDDcd116594.07E-3155107No hitNo description
SMARTSM007178.6E-1258105IPR001005SANT/Myb domain
PROSITE profilePS5129415.74758107IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-1361105IPR009057Homeodomain-like
PfamPF118319.6E-44441676IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGLNQW ARISSLLVRK SAKQCKARWY EWLDPAIKKT  60
EWTREEDEKL LHLAKLMPCQ WRTIAPIVGR TPAQCLDRYE RLLDQAVAKD VNYDPRDDPR  120
RLRPGEIDPN PEAKPARPDA VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LAQLQKKREL KAAGIDVRAR NKNSRAVDYS SEVAFELKPQ AGFYSTADEE KTTRSMQQEF  240
RPVTVEELEG RRRKDIEEAL IKKDVKRQKI NEMHDAPNAV AKHMGLDQEG PRRRGKLMLP  300
APQVSEAELE QIARLGVDGA LEASVSEGAG GDATRTLLGQ YNQTPAARLG MGPGATPMRT  360
PRAGPGGSDR IMAEAAALAR LQGMGTVLEG GEAGVDVAAM DFAGVTPRNV VAATPNPLAG  420
MTPSVRGAGG ATGARVVPSI AGVSATPSVA GTPLRAGSGG VGPGATPLIR DALGLNEADA  480
LTMEAAMSKR AAAARAAVMR GELRERLAGL PTPQNEYAFE VPELPEAEEE AEDAMEEDLA  540
DVRARKAREE AERRRIEELK KSKALQRQLP RPLNLDSLPA PKPAAPSTAG ASAEQLRDRA  600
EELVAAEMRG LLQHDAAKYP VKDGRDARKK GKQQHAAPGP VPVLEEFELE ALQSAAELVD  660
REVAYLRSAW DHAKLSPDDY SEVWMSVHRD LIYLPSRQRY ERAASATNVD RIDSLKSEFD  720
NVRADMEREA KKAAKLEGKL GLLLGGLQRR HGDLTGRVGE LWAQVRDAAQ ELVCFKALHE  780
RELRAAPERL EALGELVDAT KRREVDLQER FKALTRRRDE LAAALAQKRA AAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028253802Cell division cycle 5-like protein
5xjc_L0.028253802Cell division cycle 5-like protein
5yzg_L0.028253802Cell division cycle 5-like protein
5z56_L0.028253802Cell division cycle 5-like protein
5z57_L0.028253802Cell division cycle 5-like protein
5z58_L0.028253802Cell division cycle 5-like protein
6ff4_L0.028253802Cell division cycle 5-like protein
6ff7_L0.028253802Cell division cycle 5-like protein
6icz_L0.028253802Cell division cycle 5-like protein
6id0_L0.028253802Cell division cycle 5-like protein
6id1_L0.028253802Cell division cycle 5-like protein
6qdv_O0.028253802Cell division cycle 5-like protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.26550.0normal conditions| nutrient deficiency
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g197350.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001693296.10.0predicted protein, partial
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A2K3DYR40.0A0A2K3DYR4_CHLRE; Uncharacterized protein
STRINGEDP033220.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Representative plantOGRP39481723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]