PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre04.g229948.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 799aa    MW: 83331.4 Da    PI: 6.822
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre04.g229948.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-0881102426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          lC+++a  G C yGd+C+F+H+
  Cre04.g229948.t1.1  81 DLCSNHAL-GRCTYGDTCRFSHD 102
                         59******.*************6 PP
2zf-CCCH17.76.4e-06118136624
                         -SGGGGTS--TTTTT-SS- CS
             zf-CCCH   6 CrffartGtCkyGdrCkFa 24 
                         C+f a+t +C+yG +C++a
  Cre04.g229948.t1.1 118 CPFLAATSECPYGVTCRYA 136
                         *****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.001577103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.42277104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-481102IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-581102IPR000571Zinc finger, CCCH-type
SMARTSM0035629114139IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.756117142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.704.6E-72429676IPR013785Aldolase-type TIM barrel
CDDcd028011.41E-90433672No hitNo description
SuperFamilySSF513959.52E-62434750No hitNo description
PfamPF012077.7E-53436685IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360518536IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MLARNIVPVK AEYLIRKPAL KPAAAGTEPT AAGANGAGAV QDPTAAGGKG SGEANAKPEE  60
QSKSQGRKQM RKDVKAGRGA DLCSNHALGR CTYGDTCRFS HDIGAFIRSK PADLPGSCPF  120
LAATSECPYG VTCRYARSHT APVSDDANHQ LLATIPPPPP LALSAPLPST ATADEAAEAE  180
AEAEAAGPLP LPVPAAGGMV KEQNVMKKEV QAQLWKNRYD FSKADGILKE MGLRISFKQS  240
GGGGGGRGGD GGGRGGGGRD GGRGGRGGGR GGGRKGQQQQ QQQQQEEKEK EDGAGEGKKQ  300
AGAERAPEAM EAEGAAGEAA AADVAEDDDT REAKRRRTEG SGGSEAAEGA KAAAAPAVAA  360
GPAVAAAPSS DAAAVAALAA SAEEEEAANA AANPAATAAA AAAADKAEGS TGVAALSSRV  420
HPGERRKLDL RGKTYLAPLT TVGNLPFRRI VKGLGCDVTC GEMALATNLL QGQASEWALL  480
KRHPCEDLFG VQVCGGYPDA LARVGQLLSQ ECEAVDFMDI NMGCPIDLVC DKNAGSALLR  540
QPKRMEQIVR ATAAALGEVP LTFKTRKGYN DGEDVAHTFL HRAGEWGAAA VTLHGRTRQQ  600
RYSRLADWDY IAQVGSNCAA TGLQLIGNGD VFSYTDWNAH MGESGGHLAA LMIGRGALIK  660
PWLFTEIKEQ RHWDISAGER LELYKQYAAA GLEHWGADSR GVENTRRFLL EWLSFTHRYV  720
PVGLIEVLPQ AMNHRPPAYR GRNPLESLLA SDDPQDWLRI SEMLLGPPPA PISFAAKHKS  780
NSYASVPGGS SEADMARG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A1e-2142768124266tRNA-dihydrouridine synthase B
6ei9_B1e-2142768124266tRNA-dihydrouridine synthase B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260268GGRGGRGGG
2262270RGGRGGGRG
3265273RGGGRGGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre04.g229948.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002951897.10.0hypothetical protein VOLCADRAFT_105302
TrEMBLA0A2K3DUZ80.0A0A2K3DUZ8_CHLRE; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_002951897.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP58777
Representative plantOGRP57511213