PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre04.g231124.t1.1
Common NameCHLREDRAFT_22211
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 178aa    MW: 18591.1 Da    PI: 9.0854
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre04.g231124.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.6e-123862227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt+ C ++++ G C++G+rC+FaHg+
  Cre04.g231124.t1.1 38 KTKVCTRWLQ-GDCRFGARCNFAHGE 62
                        89********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.5E-153568IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-83667IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9293663IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-63662IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-93862IPR000571Zinc finger, CCCH-type
SuperFamilySSF510454.9E-8133168IPR001202WW domain
PROSITE profilePS5002012.669134168IPR001202WW domain
SMARTSM004565.5E-9135168IPR001202WW domain
CDDcd002012.93E-7137168No hitNo description
PfamPF003971.8E-10137166IPR001202WW domain
Gene3DG3DSA:2.20.70.102.7E-7139168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDGAFPNRRG DGYGGSQGDG EGQGGKPRGF RGTAENAKTK VCTRWLQGDC RFGARCNFAH  60
GEHELRKLPE RQGGRGGGGR GYGGNAGPYG GRGGYGGGGY GGQPGMPGGY GGGQGGAPGP  120
NVSEDVWAAQ GYPVQGPNGW VQYRTRDTGE PYFHNHRTNE TVWDRPADWP VTMQGQI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18997GGRGGYGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre04.g231124.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001703693.11e-121RNA binding protein
TrEMBLA8JIB81e-120A8JIB8_CHLRE; RNA binding protein
STRINGEDO963841e-121(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP569077
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-09C3H family protein
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]