PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre06.g254650.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 341aa    MW: 36914.1 Da    PI: 6.3808
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre06.g254650.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.4e-13195220126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         y    C+++ +tG+C+yGd+CkF+H+
  Cre06.g254650.t1.2 195 YQPDVCKDYKETGYCSYGDTCKFMHD 220
                         66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-9192225IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-8194221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169194222IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10195220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-12195225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.105.5E-9257319IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.89E-10273319No hitNo description
PROSITE profilePS500899.908274315IPR001841Zinc finger, RING-type
SMARTSM001848.4E-5274315IPR001841Zinc finger, RING-type
CDDcd001627.76E-6274315No hitNo description
PROSITE patternPS005180293302IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034247Biological ProcesssnoRNA splicing
GO:0045292Biological ProcessmRNA cis splicing, via spliceosome
GO:0005684Cellular ComponentU2-type spliceosomal complex
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKDDAAAAAE RPADMPTDAA DAAGPGPNSA AVAAAAGSAG MFRRKKGGAN IRKRGGAEGG  60
SDDDEAGGGV VRKAKAAKSD APLAFTTKKD DKETLMVEFA GSKALQDGKD TLATRVLETE  120
TEYDRDARAR REEVLKQATA AEGAADDGTY KGMNAYVDYR KGFRREHTVA AEKGTGSHGP  180
LRGNAYVRVT ARFDYQPDVC KDYKETGYCS YGDTCKFMHD RGDYKSGWEL DKMWEEEQKR  240
KAEALAKGWN PDADGEEEEE QGGGREDDEL PFACFICREP WEACKSPPVV TRCKHYFCEK  300
CALKHNAKTT KCAVCGVATQ GIFNVAQDII KRQKRMGVVG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-574134018324RING finger protein 113A
5z58_M6e-574134018324RING finger protein 113A
6ff4_t6e-574134018324RING finger protein 113A
6ff7_t6e-574134018324RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre06.g254650.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU8140140.0GU814014.1 Chlamydomonas reinhardtii strain CC-503 NIC7p (NIC7p), SPS1p (SPS1p), SPP1Cp (SPP1Cp), EIF5Bbp (EIF5Bbp), PTC1p (PTC1p), 182394p (182394p), 97782p (97782p), RFC4p (RFC4p), 182392p (182392p), ALB3p (ALB3p), PSF2p (PSF2p), 182390p (182390p), 182389p (182389p), HDH1p (HDH1p), TOC34p (TOC34p), PDK1p (PDK1p), CGL70p (CGL70p), NMDA1p (NMDA1p), DRG1p (DRG1p), DLA3p (DLA3p), 522872p (522872p), LEU1Sp (LEU1Sp), SPL2p (SPL2p), FUS1p (FUS1p), LPS1p (LPS1p), 522875p (522875p), PKY1p (PKY1p), MADS2p (MADS2p), UBCH1p (UBCH1p), GCSHp (GCSHp), PR46ap (PR46ap), PR46bp (PR46bp), MTP0618p (MTP0618p), 155027p (155027p), OTU2ap (OTU2ap), HGRP1p (HGRP1p), UTP1p (UTP1p), MTP0796p (MTP0796p), SAD1p (SAD1p), and THI10p (THI10p) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001696382.10.0predicted protein
TrEMBLA0A2K3DMB10.0A0A2K3DMB1_CHLRE; Uncharacterized protein
STRINGEDP083590.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.14e-79C3H family protein