PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre06.g278181.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

ERF

Protein Properties

Length: 1521aa MW: 147833 Da PI: 7.1522

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre06.g278181.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	26.8	1.3e-08	1137	1185	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GV++ + grW+A+ ++ +g + ++lg ++t+ eAa+a ++a ++g+ Cre06.g278181.t1.1 1137 KYTGVYRTP-GGRWRAQ---FCYRG--AVHQLGMYDTEREAAAAWDQAVVTFRGH 1185 8***999.9**...97765..******99******98888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	4.4E-4	1137	1200	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-9	1137	1187	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.4E-7	1137	1194	IPR001471	AP2/ERF domain
Pfam	PF00847	6.0E-5	1137	1179	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	12.8	1137	1194	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1521 aa Download sequence Send to blast
MQNGAQATGA VAFAPTVPQA ATQPAAFVWP IAQGTAATGQ GIGGTVASAA PTAQALPATI 60 YATTVGESTG VPQAQPNPFF SAHLAHLSPS GSDTPNPAQA APAPGAATSA FAGMWPQAFP 120 GLQPQDPATA AACAAAQAQV VAAQPAAALA PAANVTAPAP AAVPAAADPA AAAAAAAAAA 180 PATGAAAVTP QQLMMMQQFL VAQQHQQQQQ QAAAAAAAAA AAAAGAAAAA APATAATVDP 240 AAAQATADAM QQATTGGLSL ARMTNAAADA SAAMPPAAPA VPRPPMPAAV APAAATAAPA 300 AAPAAAAANP AMMWPAAFMN PWTSIFMSMG YPPATAAAMA TAHQQTQQQQ AAAAAAAGAA 360 APAAAAPAVP TAAPPAQQVT AAPVQAPAPV AQDPAAAAAA AAAAAAAANP AAAAAAAPNP 420 LLHMFTGQAA AAPVAAPQAQ MPTIAAPHPY GTDPATVAAA AASIAATQHQ HQHAAAQPAA 480 APVVPAAAVS ATAPAAAAAM MMNPQAAAAA AAQQQAAAAA MLQHMWRPAA FGFMGMPGML 540 AGLGMMHPGM MHAGMVPGMQ PHQAAAMMSA YYAAAAAHQQ QHQQQQQHQQ QHQQHQQHQH 600 AAGAAAAVVP MAAPAVAPAA MPAATAASAV PHATAVSPFP SLFQSAPVPG APGPAGVPMH 660 VPMPHAGMPA APVAPKPEPM TAAGAGGSAA GGAAAAPRAA RGGSTRSRGG RGGARAQQQH 720 HHQAAPPPPA TAAQAAAQAH NMLRLHSVAS ADLVGVEALQ LLAASPPSSP LHHGHHGEAA 780 AGGGAAGAAA TGTGTGGRRL SGGSGASDTT GAGAAAGGGG GGGAGSEVVD GVKVEPGAAG 840 HHRRFDLPDP APVAGAPGGS GAAPGSLLDR QRLLHLATTG VQRVRSRRPA PVPFEEDAEP 900 LPLPLPLPAG AKRARSATKR RGRASPTPGG ALAAVLPELI DAAADRAQEA ATAAAGGRRV 960 QWAAAVESEE ERGEDEEEAA EGAEGGGGAG AEGGEEAYEW NGEEEDEEDG VDAGAEDDDS 1020 DEDYGERRRR GRRGSSKKRR GGAAGGGAAR GGRRGSGAVA AAAAPISSDG DGDGEDENMG 1080 SEDMGGQDGE DGEDGDGRRG SRRNGHGRPP GAGNLRKMKP RRVQSDGRLG FAMRSQKYTG 1140 VYRTPGGRWR AQFCYRGAVH QLGMYDTERE AAAAWDQAVV TFRGHSSGVQ LNLPHLLNSY 1200 DLQDVREQIH QILDSKIATT RTKRCINSYA RNPPGPASPS RVVPAALMDV LPGEKLPAGG 1260 VAGGGAGGDG GGVGTDGGGS GPASSGGGGG TRRARTRGGA AGGGGSAGGG SRRRQRGGNS 1320 SSEDSGGGSD GGEGRRGRAR QRRRVPVPAQ LVEGAGAGSG DEGNGDLGLA AESEVAGAMP 1380 SGGAGGGAGM DVGGAAALGL AALRRQQRQH LPPATAPAHP HHHGTGAGGA ADAAAVNAAA 1440 AALTALPQAA GHAPADEYGP GAGGADGAGG GGRRGETSSG YDGPDLLDPH DLLWDVTEHR 1500 VRAQSPKRHR KSHAYRSPDY *

Sequence ? help Back to Top

Protein Sequence Length: 1521 aa Download sequence Send to blast

MQNGAQATGA VAFAPTVPQA ATQPAAFVWP IAQGTAATGQ GIGGTVASAA PTAQALPATI  60
YATTVGESTG VPQAQPNPFF SAHLAHLSPS GSDTPNPAQA APAPGAATSA FAGMWPQAFP  120
GLQPQDPATA AACAAAQAQV VAAQPAAALA PAANVTAPAP AAVPAAADPA AAAAAAAAAA  180
PATGAAAVTP QQLMMMQQFL VAQQHQQQQQ QAAAAAAAAA AAAAGAAAAA APATAATVDP  240
AAAQATADAM QQATTGGLSL ARMTNAAADA SAAMPPAAPA VPRPPMPAAV APAAATAAPA  300
AAPAAAAANP AMMWPAAFMN PWTSIFMSMG YPPATAAAMA TAHQQTQQQQ AAAAAAAGAA  360
APAAAAPAVP TAAPPAQQVT AAPVQAPAPV AQDPAAAAAA AAAAAAAANP AAAAAAAPNP  420
LLHMFTGQAA AAPVAAPQAQ MPTIAAPHPY GTDPATVAAA AASIAATQHQ HQHAAAQPAA  480
APVVPAAAVS ATAPAAAAAM MMNPQAAAAA AAQQQAAAAA MLQHMWRPAA FGFMGMPGML  540
AGLGMMHPGM MHAGMVPGMQ PHQAAAMMSA YYAAAAAHQQ QHQQQQQHQQ QHQQHQQHQH  600
AAGAAAAVVP MAAPAVAPAA MPAATAASAV PHATAVSPFP SLFQSAPVPG APGPAGVPMH  660
VPMPHAGMPA APVAPKPEPM TAAGAGGSAA GGAAAAPRAA RGGSTRSRGG RGGARAQQQH  720
HHQAAPPPPA TAAQAAAQAH NMLRLHSVAS ADLVGVEALQ LLAASPPSSP LHHGHHGEAA  780
AGGGAAGAAA TGTGTGGRRL SGGSGASDTT GAGAAAGGGG GGGAGSEVVD GVKVEPGAAG  840
HHRRFDLPDP APVAGAPGGS GAAPGSLLDR QRLLHLATTG VQRVRSRRPA PVPFEEDAEP  900
LPLPLPLPAG AKRARSATKR RGRASPTPGG ALAAVLPELI DAAADRAQEA ATAAAGGRRV  960
QWAAAVESEE ERGEDEEEAA EGAEGGGGAG AEGGEEAYEW NGEEEDEEDG VDAGAEDDDS  1020
DEDYGERRRR GRRGSSKKRR GGAAGGGAAR GGRRGSGAVA AAAAPISSDG DGDGEDENMG  1080
SEDMGGQDGE DGEDGDGRRG SRRNGHGRPP GAGNLRKMKP RRVQSDGRLG FAMRSQKYTG  1140
VYRTPGGRWR AQFCYRGAVH QLGMYDTERE AAAAWDQAVV TFRGHSSGVQ LNLPHLLNSY  1200
DLQDVREQIH QILDSKIATT RTKRCINSYA RNPPGPASPS RVVPAALMDV LPGEKLPAGG  1260
VAGGGAGGDG GGVGTDGGGS GPASSGGGGG TRRARTRGGA AGGGGSAGGG SRRRQRGGNS  1320
SSEDSGGGSD GGEGRRGRAR QRRRVPVPAQ LVEGAGAGSG DEGNGDLGLA AESEVAGAMP  1380
SGGAGGGAGM DVGGAAALGL AALRRQQRQH LPPATAPAHP HHHGTGAGGA ADAAAVNAAA  1440
AALTALPQAA GHAPADEYGP GAGGADGAGG GGRRGETSSG YDGPDLLDPH DLLWDVTEHR  1500
VRAQSPKRHR KSHAYRSPDY *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	707	715	RGGRGGARA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre06.g278181.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DP43	0.0	A0A2K3DP43_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9751	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	2e-06	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Cre06.g278181.t1.1