PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre06.g278181.t2.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

ERF

Protein Properties

Length: 1406aa MW: 136874 Da PI: 7.2553

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre06.g278181.t2.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	26.9	1.2e-08	1022	1070	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GV++ + grW+A+ ++ +g + ++lg ++t+ eAa+a ++a ++g+ Cre06.g278181.t2.1 1022 KYTGVYRTP-GGRWRAQ---FCYRG--AVHQLGMYDTEREAAAAWDQAVVTFRGH 1070 8***999.9**...97765..******99******98888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	12.8	1022	1079	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-9	1022	1072	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.2E-7	1022	1079	IPR001471	AP2/ERF domain
SMART	SM00380	4.4E-4	1022	1085	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1406 aa Download sequence Send to blast
MWPQAFPGLQ DPATAAACAA AQAQVVAAQP AAALAPAANV TAPAPAAVPA AADPAAAAAA 60 AAAAAPATGA AAVTPQQLMM MQQFLVAQQH QQQQQQAAAA AAAAAAAAAG AAAAAAPATA 120 ATVDPAAAQA TADAMQQATT GGLSLARMTN AAADASAAMP PAAPAVPRPP MPAAVAPAAA 180 TAAPAAAPAA AAANPAMMWP AAFMNPWTSI FMSMGYPPAT AAAMATAHQQ TQQQQAAAAA 240 AAGAAAPAAA APAVPTAAPP AQQVTAAPVQ APAPVAQDPA AAAAAAAAAA AAANPAAAAA 300 AAPNPLLHMF TGQAAAAPVA APQAQMPTIA APHPYGTDPA TVAAAAASIA ATQHQHQHAA 360 AQPAAAPVVP AAAVSATAPA AAAAMMMNPQ AAAAAAAQQQ AAAAAMLQHM WRPAAFGFMG 420 MPGMLAGLGM MHPGMMHAGM VPGMQPHQAA AMMSAYYAAA AAHQQQHQQQ QQHQQQHQQH 480 QQHQHAAGAA AAVVPMAAPA VAPAAMPAAT AASAVPHATA VSPFPSLFQS APVPGAPGPA 540 GVPMHVPMPH AGMPAAPVAP KPEPMTAAGA GGSAAGGAAA APRAARGGST RSRGGRGGAR 600 AQQQHHHQAA PPPPATAAQA AAQAHNMLRL HSVASADLVG VEALQLLAAS PPSSPLHHGH 660 HGEAAAGGGA AGAAATGTGT GGRRLSGGSG ASDTTGAGAA AGGGGGGGAG SEVVDGVKVE 720 PGAAGHHRRF DLPDPAPVAG APGGSGAAPG SLLDRQRLLH LATTGVQRVR SRRPAPVPFE 780 EDAEPLPLPL PLPAGAKRAR SATKRRGRAS PTPGGALAAV LPELIDAAAD RAQEAATAAA 840 GGRRVQWAAA VESEEERGED EEEAAEGAEG GGGAGAEGGE EAYEWNGEEE DEEDGVDAGA 900 EDDDSDEDYG ERRRRGRRGS SKKRRGGAAG GGAARGGRRG SGAVAAAAAP ISSDGDGDGE 960 DENMGSEDMG GQDGEDGEDG DGRRGSRRNG HGRPPGAGNL RKMKPRRVQS DGRLGFAMRS 1020 QKYTGVYRTP GGRWRAQFCY RGAVHQLGMY DTEREAAAAW DQAVVTFRGH SSGVQLNLPH 1080 LLNSYDLQDV REQIHQILDS KIATTRTKRC INSYARNPPG PASPSRVVPA ALMDVLPGEK 1140 LPAGGVAGGG AGGDGGGVGT DGGGSGPASS GGGGGTRRAR TRGGAAGGGG SAGGGSRRRQ 1200 RGGNSSSEDS GGGSDGGEGR RGRARQRRRV PVPAQLVEGA GAGSGDEGNG DLGLAAESEV 1260 AGAMPSGGAG GGAGMDVGGA AALGLAALRR QQRQHLPPAT APAHPHHHGT GAGGAADAAA 1320 VNAAAAALTA LPQAAGHAPA DEYGPGAGGA DGAGGGGRRG ETSSGYDGPD LLDPHDLLWD 1380 VTEHRVRAQS PKRHRKSHAY RSPDY*

Sequence ? help Back to Top

Protein Sequence Length: 1406 aa Download sequence Send to blast

MWPQAFPGLQ DPATAAACAA AQAQVVAAQP AAALAPAANV TAPAPAAVPA AADPAAAAAA  60
AAAAAPATGA AAVTPQQLMM MQQFLVAQQH QQQQQQAAAA AAAAAAAAAG AAAAAAPATA  120
ATVDPAAAQA TADAMQQATT GGLSLARMTN AAADASAAMP PAAPAVPRPP MPAAVAPAAA  180
TAAPAAAPAA AAANPAMMWP AAFMNPWTSI FMSMGYPPAT AAAMATAHQQ TQQQQAAAAA  240
AAGAAAPAAA APAVPTAAPP AQQVTAAPVQ APAPVAQDPA AAAAAAAAAA AAANPAAAAA  300
AAPNPLLHMF TGQAAAAPVA APQAQMPTIA APHPYGTDPA TVAAAAASIA ATQHQHQHAA  360
AQPAAAPVVP AAAVSATAPA AAAAMMMNPQ AAAAAAAQQQ AAAAAMLQHM WRPAAFGFMG  420
MPGMLAGLGM MHPGMMHAGM VPGMQPHQAA AMMSAYYAAA AAHQQQHQQQ QQHQQQHQQH  480
QQHQHAAGAA AAVVPMAAPA VAPAAMPAAT AASAVPHATA VSPFPSLFQS APVPGAPGPA  540
GVPMHVPMPH AGMPAAPVAP KPEPMTAAGA GGSAAGGAAA APRAARGGST RSRGGRGGAR  600
AQQQHHHQAA PPPPATAAQA AAQAHNMLRL HSVASADLVG VEALQLLAAS PPSSPLHHGH  660
HGEAAAGGGA AGAAATGTGT GGRRLSGGSG ASDTTGAGAA AGGGGGGGAG SEVVDGVKVE  720
PGAAGHHRRF DLPDPAPVAG APGGSGAAPG SLLDRQRLLH LATTGVQRVR SRRPAPVPFE  780
EDAEPLPLPL PLPAGAKRAR SATKRRGRAS PTPGGALAAV LPELIDAAAD RAQEAATAAA  840
GGRRVQWAAA VESEEERGED EEEAAEGAEG GGGAGAEGGE EAYEWNGEEE DEEDGVDAGA  900
EDDDSDEDYG ERRRRGRRGS SKKRRGGAAG GGAARGGRRG SGAVAAAAAP ISSDGDGDGE  960
DENMGSEDMG GQDGEDGEDG DGRRGSRRNG HGRPPGAGNL RKMKPRRVQS DGRLGFAMRS  1020
QKYTGVYRTP GGRWRAQFCY RGAVHQLGMY DTEREAAAAW DQAVVTFRGH SSGVQLNLPH  1080
LLNSYDLQDV REQIHQILDS KIATTRTKRC INSYARNPPG PASPSRVVPA ALMDVLPGEK  1140
LPAGGVAGGG AGGDGGGVGT DGGGSGPASS GGGGGTRRAR TRGGAAGGGG SAGGGSRRRQ  1200
RGGNSSSEDS GGGSDGGEGR RGRARQRRRV PVPAQLVEGA GAGSGDEGNG DLGLAAESEV  1260
AGAMPSGGAG GGAGMDVGGA AALGLAALRR QQRQHLPPAT APAHPHHHGT GAGGAADAAA  1320
VNAAAAALTA LPQAAGHAPA DEYGPGAGGA DGAGGGGRRG ETSSGYDGPD LLDPHDLLWD  1380
VTEHRVRAQS PKRHRKSHAY RSPDY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	592	600	RGGRGGARA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre06.g278181.t2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DP41	0.0	A0A2K3DP41_CHLRE; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-06	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Cre06.g278181.t2.1