PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre06.g305200.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C2H2
Protein Properties Length: 335aa    MW: 34021.2 Da    PI: 8.1021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre06.g305200.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-051536323
                        ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                        C +C++ F + s L +H+++ H
  Cre06.g305200.t1.1 15 CYYCDRIFDDESALIVHQKNkH 36
                        99*****************988 PP
2zf-C2H211.10.00123756120
                        EEETTTTEEESSHHHHHHHH CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                        +kCp C++  ++   L +H 
  Cre06.g305200.t1.1 37 FKCPECNRKMNTAQGLATHA 56
                        89*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.951336IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801336IPR007087Zinc finger, C2H2
SMARTSM003550.13760IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7673760IPR007087Zinc finger, C2H2
PROSITE patternPS0002803960IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGKKKKQKEI EQCFCYYCDR IFDDESALIV HQKNKHFKCP ECNRKMNTAQ GLATHAFQVH  60
KLTITAVPAA KAGRDSMAVE IFGMAGVPDD VRPAKLQGDG PALKKARADD DDDVTPPPAP  120
PPPPGGMPPP MGGYHPGMPP PMGYPPYGAP PPYGYPPYGP PPPGYPPRPG MPPPYGAPPP  180
YGMPPPGYPP RPGMPPPGMP PGAPPPLGGP RPPFPPYGMP PPGMPPPGMP PPGMPPPGMP  240
PPGAPGGPLF PIGQAPPGAP PALFPIGSSA QPPAAGADAG AGAAAAPAAA GSVAPAPGDG  300
SVVVWTDEEC SIEERRAQLP RYAIAAGGPG RNGA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre06.g305200.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DR960.0A0A2K3DR96_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41351011
Representative plantOGRP4587810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.16e-31C2H2 family protein