PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre08.g361400.t1.2

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

CPP

Protein Properties

Length: 2022aa MW: 198776 Da PI: 7.8499

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre08.g361400.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.9	4.9e-14	713	750	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+C+Ckks+Clk+YC+Cfaag++C+ C+C +C+N+ e Cre08.g361400.t1.2 713 AKSCRCKKSQCLKLYCDCFAAGQFCGA-CSCASCQNRPE 750 589*********************9.******876 PP
2	TCR	49.1	1.1e-15	784	824	1	41
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+k+gCnCk+s+ClkkYCeCf+ g+kC+ +CkC +C+N ++ Cre08.g361400.t1.2 784 KHKRGCNCKRSHCLKKYCECFQGGVKCGMQCKCLECENMDD 824 589***********************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.9E-11	711	751	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	30.729	712	824	IPR005172	CRC domain
Pfam	PF03638	5.3E-11	714	748	IPR005172	CRC domain
SMART	SM01114	9.6E-15	784	825	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	8.9E-12	786	822	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 2022 aa Download sequence Send to blast
MRPESREQPK GQRRQATAHK PAEADLGSPL FLRNEVGNSP LPPMGSPLQY GVQSPCKYPL 60 FLESSTPRAT PRSAAPRDNN SKPSDLESSQ RMPFRSPFSP MRNHAPMALG ATQTPTPRRG 120 GVISVLTLLG GGRHTVAGAD IKPADGASHG AGGACAAAPS AAGTGSTTGA ASDGFAAASG 180 LGGGAGCGPG AGCQPGTEGP ALPPRSETPT AAGMAQCTAG FFSPNADMDA FFRLGSPMFA 240 TPARFTSTDL GSLAPFPLAG STPTAAMLLS PLPGLAGLGT LKSEVGADLA EPTGASGAGR 300 RRGRYLDFSG GAGAAGGEGG EVSGANAAAG QHQQHQQQQQ QQQDQQQMQL PARGLPPPLP 360 PLPPLPHFPS GSVNGGVPPP PGAPVLPPQG WGLPPPPALA MLQPPAPQQQ AGQPMQVDGA 420 EVRYSSQLPG MSSLLPFSSS TGGGSAGMGG VGVRGGLLST GSGSGSLDGS GGLGAGGGSG 480 NGGDMFGSRD SSPDMESGAG GAVGRGSAAR QVLLPPPAPL DVPPPSGVPS PVEYWDTVGV 540 DVRHPASGGD AVADAVANAL AAATAAASAV AVQHQHQSQR PSSSHQDASL PPAARQRNGG 600 GSTTTSASAP PPQPPPQQQP RQQPRSAAAA STAVAASPAT LQRPQRNRIA NTMLYGTTAV 660 VGGGSGGGGA GGRSTPSLMD ISVLDSDAPS SMDAKRSSAS GGNRARRPSD SGAKSCRCKK 720 SQCLKLYCDC FAAGQFCGAC SCASCQNRPE YADRVQQRRE DIAARDPQAF TRKIMDAPGG 780 GGGKHKRGCN CKRSHCLKKY CECFQGGVKC GMQCKCLECE NMDDDALGGG GGGGGAGGAG 840 AAAMAGAAKR TGNARQAAAA AAMSSGSWGR GGHAASVSAT ASDDDERSPP PPPDLPLPLP 900 LPAAAAMMAA AGGGGGLPPP PGLTSMASGG VVGGGGLSGY TDAGPEAGLP LPQPAAVEAM 960 VAAAAAAGAA SAVKPPRGGA PVGGGGSSKA GGGARKPPLP NSRGGRSRAK AKPWEMDTDD 1020 EEDAAAGMAA AEASDRGESG PEEGEDRLPL PLPASAGGAA GPAGLLPMPM PAPRHAQMQM 1080 PLGALPLPAQ QHQQPQQHAA AAAPPLPDSI LFPQRQAQAQ RHDTYQQQQQ QQHQQQQHQQ 1140 QQHNQQYQQQ HYHHQEQHAA DGQTARFGDL PGVKQEQEAA GLGATAAGHF SAPAQHHQHH 1200 QQHQQHQAPP QLEEAMQLPR IHTSFQPQSL SQHANPQQHH HHQQHQPHSA EPPVPSQHQP 1260 QQQQEQHQHP GPQQREFTQS GFQQQQPQQQ PQQQPRQPPT ATAAAAAAAL AADLSACTTP 1320 LSAALAAAGF NFDAGTPNAA AALAAFDLGD LPAALLMATP PTVGAGNAAA VAGGGGGGGV 1380 EREAAGADVK PGRDQRTADH TAADANADAH TVVRCQPAGS EPAAAGRGAG GAAAAACARS 1440 SLLPMSPMAP ATMLARHAIL AADSDDEDAG GDGGGGGRGG GAKVQGAAAA MAAAAAASAL 1500 AAGVVLPRQD QSQAAAAAAA EAGGGVAPMA ITPRRRGHGA SASLDLDFDV DLGLAMAEEE 1560 MAAAHPGDDF QALLGGGGGR NGGGGCGGAD ATLVCAELLE IHGSLDHMPP VPMPDSILGG 1620 GGALRVRTGA AADCSTPRRL SRFAPPGSAT AAAAAAAAAD SHFHGGLTAS RRAAAAAAAA 1680 AVATAGGSVH TLAAPVRTCS ASAAMAGVGA DARAHGASRI TGAKRKAGAA TGSDDDSDGD 1740 TEYRPDVPSP QHRSGNPARQ PSARQAARAA AASGAGAAKA GAKAGAKGGA AAAGGGGGTK 1800 SNGPDKEAMK AIALQYMTQR LGGGGPPCAP PGVPAPTPGP APAPGQLPLP AGLLPVPAPV 1860 PLSSVPGAGA AGIPPRPLAA AAQPPAGPPP PPPRAPSPAA VPAPDPPSHQ QHAAAEAGRR 1920 RPTSPDLCSP PATLTAPGAG LGLGLSQPPP HQQQQTQTAA STAPAPAAAA AAAGSSAGGG 1980 AAACGGGGGG KGLTCLTSLT RLTPMTKLGS GSTLFFSPGG R*

Sequence ? help Back to Top

Protein Sequence Length: 2022 aa Download sequence Send to blast

MRPESREQPK GQRRQATAHK PAEADLGSPL FLRNEVGNSP LPPMGSPLQY GVQSPCKYPL  60
FLESSTPRAT PRSAAPRDNN SKPSDLESSQ RMPFRSPFSP MRNHAPMALG ATQTPTPRRG  120
GVISVLTLLG GGRHTVAGAD IKPADGASHG AGGACAAAPS AAGTGSTTGA ASDGFAAASG  180
LGGGAGCGPG AGCQPGTEGP ALPPRSETPT AAGMAQCTAG FFSPNADMDA FFRLGSPMFA  240
TPARFTSTDL GSLAPFPLAG STPTAAMLLS PLPGLAGLGT LKSEVGADLA EPTGASGAGR  300
RRGRYLDFSG GAGAAGGEGG EVSGANAAAG QHQQHQQQQQ QQQDQQQMQL PARGLPPPLP  360
PLPPLPHFPS GSVNGGVPPP PGAPVLPPQG WGLPPPPALA MLQPPAPQQQ AGQPMQVDGA  420
EVRYSSQLPG MSSLLPFSSS TGGGSAGMGG VGVRGGLLST GSGSGSLDGS GGLGAGGGSG  480
NGGDMFGSRD SSPDMESGAG GAVGRGSAAR QVLLPPPAPL DVPPPSGVPS PVEYWDTVGV  540
DVRHPASGGD AVADAVANAL AAATAAASAV AVQHQHQSQR PSSSHQDASL PPAARQRNGG  600
GSTTTSASAP PPQPPPQQQP RQQPRSAAAA STAVAASPAT LQRPQRNRIA NTMLYGTTAV  660
VGGGSGGGGA GGRSTPSLMD ISVLDSDAPS SMDAKRSSAS GGNRARRPSD SGAKSCRCKK  720
SQCLKLYCDC FAAGQFCGAC SCASCQNRPE YADRVQQRRE DIAARDPQAF TRKIMDAPGG  780
GGGKHKRGCN CKRSHCLKKY CECFQGGVKC GMQCKCLECE NMDDDALGGG GGGGGAGGAG  840
AAAMAGAAKR TGNARQAAAA AAMSSGSWGR GGHAASVSAT ASDDDERSPP PPPDLPLPLP  900
LPAAAAMMAA AGGGGGLPPP PGLTSMASGG VVGGGGLSGY TDAGPEAGLP LPQPAAVEAM  960
VAAAAAAGAA SAVKPPRGGA PVGGGGSSKA GGGARKPPLP NSRGGRSRAK AKPWEMDTDD  1020
EEDAAAGMAA AEASDRGESG PEEGEDRLPL PLPASAGGAA GPAGLLPMPM PAPRHAQMQM  1080
PLGALPLPAQ QHQQPQQHAA AAAPPLPDSI LFPQRQAQAQ RHDTYQQQQQ QQHQQQQHQQ  1140
QQHNQQYQQQ HYHHQEQHAA DGQTARFGDL PGVKQEQEAA GLGATAAGHF SAPAQHHQHH  1200
QQHQQHQAPP QLEEAMQLPR IHTSFQPQSL SQHANPQQHH HHQQHQPHSA EPPVPSQHQP  1260
QQQQEQHQHP GPQQREFTQS GFQQQQPQQQ PQQQPRQPPT ATAAAAAAAL AADLSACTTP  1320
LSAALAAAGF NFDAGTPNAA AALAAFDLGD LPAALLMATP PTVGAGNAAA VAGGGGGGGV  1380
EREAAGADVK PGRDQRTADH TAADANADAH TVVRCQPAGS EPAAAGRGAG GAAAAACARS  1440
SLLPMSPMAP ATMLARHAIL AADSDDEDAG GDGGGGGRGG GAKVQGAAAA MAAAAAASAL  1500
AAGVVLPRQD QSQAAAAAAA EAGGGVAPMA ITPRRRGHGA SASLDLDFDV DLGLAMAEEE  1560
MAAAHPGDDF QALLGGGGGR NGGGGCGGAD ATLVCAELLE IHGSLDHMPP VPMPDSILGG  1620
GGALRVRTGA AADCSTPRRL SRFAPPGSAT AAAAAAAAAD SHFHGGLTAS RRAAAAAAAA  1680
AVATAGGSVH TLAAPVRTCS ASAAMAGVGA DARAHGASRI TGAKRKAGAA TGSDDDSDGD  1740
TEYRPDVPSP QHRSGNPARQ PSARQAARAA AASGAGAAKA GAKAGAKGGA AAAGGGGGTK  1800
SNGPDKEAMK AIALQYMTQR LGGGGPPCAP PGVPAPTPGP APAPGQLPLP AGLLPVPAPV  1860
PLSSVPGAGA AGIPPRPLAA AAQPPAGPPP PPPRAPSPAA VPAPDPPSHQ QHAAAEAGRR  1920
RPTSPDLCSP PATLTAPGAG LGLGLSQPPP HQQQQTQTAA STAPAPAAAA AAAGSSAGGG  1980
AAACGGGGGG KGLTCLTSLT RLTPMTKLGS GSTLFFSPGG R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-25	705	824	7	123	Protein lin-54 homolog
5fd3_B	2e-25	705	824	7	123	Protein lin-54 homolog

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1577	1584	GGRNGGGG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre08.g361400.t1.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DGK7	0.0	A0A2K3DGK7_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP323	15	30
Representative plant	OGRP993	17	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-32	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Cre08.g361400.t1.2