PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre08.g371052.t1.1
Common NameCHLREDRAFT_20714, IRE1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 1598aa    MW: 156007 Da    PI: 6.4819
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre08.g371052.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.6e-0915091533226
                          -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                          +  lC+f+ +tG+Ck+ d+C F H+
  Cre08.g371052.t1.1 1509 GKQLCDFYVKTGHCKFADTCVFDHP 1533
                          678*********************9 PP
2zf-CCCH277.7e-0915511575327
                          S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    3 telCrffartGtCkyGdrCkFaHgp 27  
                          ++ C f++++ +C +G+ CkF+H++
  Cre08.g371052.t1.1 1551 EPVCTFYLKNNECGFGPACKFNHPM 1575
                          689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509982.35E-730193IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
SMARTSM00564143365IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM005640.036158190IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM0056431223255IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM00564460388421IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM002201.2E-347371014IPR000719Protein kinase domain
PROSITE profilePS5001135.9057381014IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.208.8E-16743854No hitNo description
PfamPF000692.3E-377431012IPR000719Protein kinase domain
SuperFamilySSF561129.29E-537431019IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.103.1E-368551015No hitNo description
PROSITE patternPS001080860872IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5139233.71910171190IPR010513KEN domain
CDDcd104225.70E-4510181187No hitNo description
PfamPF064795.3E-2510981187IPR010513KEN domain
SMARTSM005808.1E-1611211177IPR018997PUB domain
Gene3DG3DSA:1.10.510.103.1E-3613801393No hitNo description
SMARTSM003566.8E-515071534IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.57315071535IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-615091533IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-515101535IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-415481575IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.34715481576IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-615511575IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000394Biological ProcessRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397Biological ProcessmRNA processing
GO:0006987Biological Processactivation of signaling protein activity involved in unfolded protein response
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0034263Biological Processautophagy in response to ER overload
GO:0046777Biological Processprotein autophosphorylation
GO:0090501Biological ProcessRNA phosphodiester bond hydrolysis
GO:0042406Cellular Componentextrinsic component of endoplasmic reticulum membrane
GO:0004521Molecular Functionendoribonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1598 aa     Download sequence    Send to blast
MPVLLLAAEG DTLSRAGRSL AEYRPHALES SASAGDGPGP LLVTLLDGRV VAVVPDSGQV  60
LWSYDTGSPL VTVKQGHAMS PGVRIFPGVD GGLYAYGALA PAAPPGGGGG GSGGGSGAEG  120
ADGGGPGAEG EAEGASGPPG TKLERLPITL PELVDASPSL TDDGSVILGR RLTRVYVLDR  180
DSGALLQTLA EGGGAAAAAA AGGGGGGAGG GHFAGFEDMP VLQLLDPGRT VVVGREDYVV  240
RSVQVHTGVE TWNATYSRLV NLRPPGSSSS SSNTPAAATA GGFPPRGAGQ AAAAALPEFT  300
VGADHTLQAH DAASGIRRWA IAFDTPPVGV FAAQHGDTNY LDPTVVAGGG AGSGKVAAGG  360
AAAAAAARRG GKGGAAAPGG ALPAAAGAAG GGKMGKVLVG QLKGSLYALP ADHVTLDASL  420
EAQPWGALAL AGPPGGGAAG VPQLPAAGGA ADNAVAVIGG AGTATSTTDV VTYMTDADSG  480
EGVVSGLVCP PGVHLLAFVD EPPAERPPLP WLPDAAKAAA RSGGGGALAP AANIGGGGAA  540
GNASGSGVGG GGGSWAAGGG GGGGSVVVVV AAGVAGAAAV LVVMHVRGGG AAGSTAASTG  600
KAGGGSDVGG LAVEAVSANG GGGGGAYGKV GKGAGGARAQ QQQGQRRKKG GAGGGGGGGG  660
IRSHRSSDGG GGALPAIDED AEVVVPPPPG QLAAVAAAAA AMPPPGSPTP ANASQHLPSA  720
EARVRVNPDG SLLIGRLRVG PAILGYGSSG TVVYEGCLDG RQVAVKRLLR QFTELARKEI  780
EVLILSDEHP NVVRCFALEE DREFVYLALE RCRSTLCDFL ATPAGRSQFV DPASRQPTAR  840
CTAAMLDICR GLAALHERGI VHRDLKPHNV LLTETLGSCG WSRAKLSDMG LSKQLVPEQS  900
SFHLLESSTH GAGGSSGWQA PEQLIARGGG AARQTRSMDV FSLGCILYYC MTGGRHPFGD  960
NTYERDANIL NGAPAVAALA AAAGPEAANL VWACLAKDPA ARPCMAAVLG HPLWWGEERR  1020
LGFLIDLSDR IENEDREPDQ SLLEALECHA RVALSGPAVA LEGAVAAGGE AAATTSSAGG  1080
AAAPALPPAI AAALAPIPNW GAALPPELLG NLGRYRRYDY TSLRDLMRVV RNKRNHFREM  1140
PQQLQAMLGP IPGGFLRYFA ARFPRLLLAG YAFSLRYLAA EPNLQQYWGG GGGAGGGGAG  1200
GGGGGGGRGG GGGGSMGGAG EATTGAGSRQ PFVQTFVSVY GPNLRPIKTA LVLPATANSN  1260
GINGSSSTSS LSTAAAANGS SSAAPAAPAA AGGGSSERDG TSGGADASGA EGAAAAGGGA  1320
WGAVAVAAAA ERSLSASSTE PTPAEAATAT AANATPSNTP SKAAKSKKQP GGGGGGAAAA  1380
AAEPQQPGTP PPPPPAAEAE AAVAPSTAAA PSTPATSTPG AAATTAATPA PAFSSPAPAP  1440
SAPAPSSFAT AAAAASATAA TASNTTTASN TTTNNNNNNN SISTAVLVGY EPSGDDGDCH  1500
VREFPRRPGK QLCDFYVKTG HCKFADTCVF DHPVEHAVRL TALGLPLRPA EPVCTFYLKN  1560
NECGFGPACK FNHPMLRPVF AGSAASDAAA VPAGADQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fbv_B1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_C1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_D1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_E1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_F1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_G1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_H1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_I1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_J1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_K1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_L1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_M1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_N1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_A1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_B1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_C1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_D1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_E1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_F1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_G1e-80721118718445Serine/threonine-protein kinase/endoribonuclease IRE1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112051213GGRGGGGGG
Function -- GeneRIF ? help Back to Top
  1. functions as an important component of the endoplasmic reticulum stress response
    [PMID: 29385296]
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre08.g371052.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001701292.10.0key regulator in ER unfolded protein response
TrEMBLA0A2K3DH950.0A0A2K3DH95_CHLRE; Uncharacterized protein
STRINGEDO975870.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28241112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.16e-21zinc finger protein 1
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]
  2. Yamaoka Y, et al.
    Identification and functional study of the endoplasmic reticulum stress sensor IRE1 in Chlamydomonas reinhardtii.
    Plant J., 2018. 94(1): p. 91-104
    [PMID:29385296]