PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre08.g371052.t2.1
Common NameCHLREDRAFT_20714, IRE1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 1597aa    MW: 155920 Da    PI: 6.4819
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre08.g371052.t2.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.5e-0915081532226
                          -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                          +  lC+f+ +tG+Ck+ d+C F H+
  Cre08.g371052.t2.1 1508 GKQLCDFYVKTGHCKFADTCVFDHP 1532
                          678*********************9 PP
2zf-CCCH277.6e-0915501574327
                          S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    3 telCrffartGtCkyGdrCkFaHgp 27  
                          ++ C f++++ +C +G+ CkF+H++
  Cre08.g371052.t2.1 1550 EPVCTFYLKNNECGFGPACKFNHPM 1574
                          689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509988.5E-817192IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
SMARTSM00564143264IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM005640.036157189IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM0056431222254IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM00564460387420IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM002201.2E-347361013IPR000719Protein kinase domain
PROSITE profilePS5001135.9057371013IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.208.8E-16742853No hitNo description
PfamPF000692.3E-377421011IPR000719Protein kinase domain
SuperFamilySSF561129.29E-537421018IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.103.1E-368541014No hitNo description
PROSITE patternPS001080859871IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5139233.71910161189IPR010513KEN domain
CDDcd104225.69E-4510171186No hitNo description
PfamPF064795.3E-2510971186IPR010513KEN domain
SMARTSM005808.1E-1611201176IPR018997PUB domain
Gene3DG3DSA:1.10.510.103.1E-3613791392No hitNo description
PROSITE profilePS5010313.57315061534IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-515061533IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-615081532IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-515091534IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.34715471575IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-415471574IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-615501574IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000394Biological ProcessRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397Biological ProcessmRNA processing
GO:0006987Biological Processactivation of signaling protein activity involved in unfolded protein response
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0034263Biological Processautophagy in response to ER overload
GO:0046777Biological Processprotein autophosphorylation
GO:0090501Biological ProcessRNA phosphodiester bond hydrolysis
GO:0042406Cellular Componentextrinsic component of endoplasmic reticulum membrane
GO:0004521Molecular Functionendoribonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1597 aa     Download sequence    Send to blast
MPVLLLAAEG DTLSRAGRSL AEYRPHALES ASAGDGPGPL LVTLLDGRVV AVVPDSGQVL  60
WSYDTGSPLV TVKQGHAMSP GVRIFPGVDG GLYAYGALAP AAPPGGGGGG SGGGSGAEGA  120
DGGGPGAEGE AEGASGPPGT KLERLPITLP ELVDASPSLT DDGSVILGRR LTRVYVLDRD  180
SGALLQTLAE GGGAAAAAAA GGGGGGAGGG HFAGFEDMPV LQLLDPGRTV VVGREDYVVR  240
SVQVHTGVET WNATYSRLVN LRPPGSSSSS SNTPAAATAG GFPPRGAGQA AAAALPEFTV  300
GADHTLQAHD AASGIRRWAI AFDTPPVGVF AAQHGDTNYL DPTVVAGGGA GSGKVAAGGA  360
AAAAAARRGG KGGAAAPGGA LPAAAGAAGG GKMGKVLVGQ LKGSLYALPA DHVTLDASLE  420
AQPWGALALA GPPGGGAAGV PQLPAAGGAA DNAVAVIGGA GTATSTTDVV TYMTDADSGE  480
GVVSGLVCPP GVHLLAFVDE PPAERPPLPW LPDAAKAAAR SGGGGALAPA ANIGGGGAAG  540
NASGSGVGGG GGSWAAGGGG GGGSVVVVVA AGVAGAAAVL VVMHVRGGGA AGSTAASTGK  600
AGGGSDVGGL AVEAVSANGG GGGGAYGKVG KGAGGARAQQ QQGQRRKKGG AGGGGGGGGI  660
RSHRSSDGGG GALPAIDEDA EVVVPPPPGQ LAAVAAAAAA MPPPGSPTPA NASQHLPSAE  720
ARVRVNPDGS LLIGRLRVGP AILGYGSSGT VVYEGCLDGR QVAVKRLLRQ FTELARKEIE  780
VLILSDEHPN VVRCFALEED REFVYLALER CRSTLCDFLA TPAGRSQFVD PASRQPTARC  840
TAAMLDICRG LAALHERGIV HRDLKPHNVL LTETLGSCGW SRAKLSDMGL SKQLVPEQSS  900
FHLLESSTHG AGGSSGWQAP EQLIARGGGA ARQTRSMDVF SLGCILYYCM TGGRHPFGDN  960
TYERDANILN GAPAVAALAA AAGPEAANLV WACLAKDPAA RPCMAAVLGH PLWWGEERRL  1020
GFLIDLSDRI ENEDREPDQS LLEALECHAR VALSGPAVAL EGAVAAGGEA AATTSSAGGA  1080
AAPALPPAIA AALAPIPNWG AALPPELLGN LGRYRRYDYT SLRDLMRVVR NKRNHFREMP  1140
QQLQAMLGPI PGGFLRYFAA RFPRLLLAGY AFSLRYLAAE PNLQQYWGGG GGAGGGGAGG  1200
GGGGGGRGGG GGGSMGGAGE ATTGAGSRQP FVQTFVSVYG PNLRPIKTAL VLPATANSNG  1260
INGSSSTSSL STAAAANGSS SAAPAAPAAA GGGSSERDGT SGGADASGAE GAAAAGGGAW  1320
GAVAVAAAAE RSLSASSTEP TPAEAATATA ANATPSNTPS KAAKSKKQPG GGGGGAAAAA  1380
AEPQQPGTPP PPPPAAEAEA AVAPSTAAAP STPATSTPGA AATTAATPAP AFSSPAPAPS  1440
APAPSSFATA AAAASATAAT ASNTTTASNT TTNNNNNNNS ISTAVLVGYE PSGDDGDCHV  1500
REFPRRPGKQ LCDFYVKTGH CKFADTCVFD HPVEHAVRLT ALGLPLRPAE PVCTFYLKNN  1560
ECGFGPACKF NHPMLRPVFA GSAASDAAAV PAGADQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fbv_B1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_C1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_D1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_E1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_F1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_G1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_H1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_I1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_J1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_K1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_L1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_M1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_N1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_A1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_B1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_C1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_D1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_E1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_F1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_G1e-80720118618445Serine/threonine-protein kinase/endoribonuclease IRE1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112041212GGRGGGGGG
Function -- GeneRIF ? help Back to Top
  1. functions as an important component of the endoplasmic reticulum stress response
    [PMID: 29385296]
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre08.g371052.t2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001701292.10.0key regulator in ER unfolded protein response
TrEMBLA0A2K3DHA40.0A0A2K3DHA4_CHLRE; Uncharacterized protein
STRINGEDO975870.0(Chlamydomonas reinhardtii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.16e-21zinc finger protein 1
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]
  2. Yamaoka Y, et al.
    Identification and functional study of the endoplasmic reticulum stress sensor IRE1 in Chlamydomonas reinhardtii.
    Plant J., 2018. 94(1): p. 91-104
    [PMID:29385296]