PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre08.g378450.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family GATA
Protein Properties Length: 497aa    MW: 48795.6 Da    PI: 4.3216
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre08.g378450.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA23.29.7e-08438470128
                GATA   1 CsnCgttkTplWRrgp.....dgnktLCnaCGl 28 
                         C+ Cg  +T+ WRr +     +g + LCnaCG 
  Cre08.g378450.t1.1 438 CEYCGEVETSKWRRFNqavgaRGMRLLCNACGA 470
                         9*************776766699999*****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.98E-6431471No hitNo description
SMARTSM004016.3E-4432493IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-7436470IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.47E-6437479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MQPTAPSAVA ASTVNGHDRD GRTGQPAAAL VPEAPHAAIP GTWAGAMAPP AASGVASEWR  60
AEQEAEAGAP AVTKDVPPCD AEAAVHTEGL ELELGLGSEE AVDAAEAAAA AEAVETVVDA  120
NADAVASADA EAEAEVEVEA INVFAAAAAA VEAAELRVQL NEALAALAAR DAELAQRNAA  180
LTAAQAAAAA ARAEAAGLRV QLESVRSHLL GVRSHLAGAL QAAQPSPSPT TSSGAAAAAA  240
AGAAAAAAAA GLSQAGLQAS ALWQSLPRAA GAAMQGAMAV AEAAQAGQQG SAAATAAARD  300
AAAETAAEAE AAAATHAGAC ERLSSVDMEG EEAGQPEVEG RVPKQDEEEG VTAAQALLTL  360
GWVPTAEAAA GSGGGVTDAA TGAAASAAGA AAGAGGQAGQ FKHQSHQAQQ QTQLRLAQAH  420
MQTQTVSEAA QLAQPQQCEY CGEVETSKWR RFNQAVGARG MRLLCNACGA QVLRARANGD  480
DEDAALSRPR KRGRVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre08.g378450.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DHW10.0A0A2K3DHW1_CHLRE; Uncharacterized protein