PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre08.g378800.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family GATA
Protein Properties Length: 211aa    MW: 22164.8 Da    PI: 8.9906
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre08.g378800.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA34.72.5e-11942134
                GATA  1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkg 34
                        C +Cgt  Tp+WR+gp d++  LCnaCG +y  kg
  Cre08.g378800.t1.2  9 CCHCGTVATPCWRKGPcDKPV-LCNACGSRYLVKG 42
                        99**************77777.*******996665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.95335IPR000679Zinc finger, GATA-type
SMARTSM004010.0015362IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-10544No hitNo description
CDDcd002022.88E-10842No hitNo description
Gene3DG3DSA:3.30.50.102.7E-9941IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.8E-9942IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRGSTGGPCC HCGTVATPCW RKGPCDKPVL CNACGSRYLV KGSLAGYFPG ARRASAGTRS  60
EAPQIQATVV SAAGKSAARK SAALSSVAAS AGAKRKVQEL DGNETGAKRI FNNYEALEEL  120
RAFFASSRGP QAPAQTSDSQ DSQGQFRDEA QYLDASSDDG LEHPDSEPVA ALRHMRAPLN  180
ATTAANYSAP HVPTFQRRPR KQLHPVPCSC *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.2581e-136normal conditions| nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre08.g378800.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001694360.11e-118predicted protein, partial
TrEMBLA0A2K3DHW31e-152A0A2K3DHW3_CHLRE; Uncharacterized protein
STRINGEDP027931e-118(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.19e-17GATA transcription factor 27