PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

Cre09.g386753.t1.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Protein Properties

Length: 74aa MW: 7815.21 Da PI: 10.5438

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre09.g386753.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	37	7e-12	22	72	16	70
S1FA 16 ivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +vl++vgg ll +i y n P r kk + k++kreklk Gv +PG+ Cre09.g386753.t1.1 22 VVLVIVGGALLY----SFIQYQRMMANAPARPKKKLGAKQIKREKLKMGVRPPGD 72 344455555443....56677777789**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	7.7E-9	17	72	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MADATGSTQD DGSNTVIVIV GVVLVIVGGA LLYSFIQYQR MMANAPARPK KKLGAKQIKR 60 EKLKMGVRPP GDD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Cre.19614	5e-69	normal conditions

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre09.g386753.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DCH3	6e-45	A0A2K3DCH3_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP14185	2	2

Link Out ? help Back to Top
Phytozome	Cre09.g386753.t1.1