PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre10.g460400.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 479aa    MW: 49384.5 Da    PI: 8.7989
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre10.g460400.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-06222245427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         ++C++f   G+C +Gd C+F+H+p
  Cre10.g460400.t1.1 222 PPCHHFVNAGFCDRGDGCPFNHPP 245
                         89********************97 PP
2zf-CCCH24.25.9e-08263284425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                         + C +f+rtG C++G rC+ +H
  Cre10.g460400.t1.1 263 PACEHFLRTGRCSFGVRCRLHH 284
                         68****************9777 PP
3zf-CCCH22.71.7e-07446467526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C  +ar+G+C+ G+rC ++H+
  Cre10.g460400.t1.1 446 ECLSYARSGWCSLGPRCLRHHP 467
                         799******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.14218246IPR000571Zinc finger, CCCH-type
SMARTSM003560.028218245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-5222245IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4222245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685259287IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4259286IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5263284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-5399427IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765399427IPR000571Zinc finger, CCCH-type
SMARTSM003560.19399426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.812441469IPR000571Zinc finger, CCCH-type
SMARTSM003562443468IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-5446467IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MLLLFIEQHG VSPCTGQALR PNMLLPNTAL KNLIKAHVWD HMTSSPVPSK RPRLGAPAAP  60
AAAATAAVIT TATAAASLPT TPAAMASPQA PAPAAAPAPA PAHQPSSRWS DMGPPPVVAA  120
TAATSPAAAA TGPTGKPPAP APPPAAAPSQ KWGPPPTSAP LPWALQPQPQ RQPQRQQNSA  180
VAGSPGGGAA TPASAGTAAA GGGGLYVPCL HTLPAPVRPY APPCHHFVNA GFCDRGDGCP  240
FNHPPQAAVL LTEQGLPWRP NAPACEHFLR TGRCSFGVRC RLHHEPGAAG AVNGGGGNGG  300
GTPGAAAAGA LAGTPRQRWG DRSNGAAADT SPVIAGAQQQ QRQAPPSTQL PSTQAQAQAP  360
QPPSHQQPHP KPPGVGVTYT YDADAEEEGE LHRYRFPQRL DANPCRQYCN TGFCREGADC  420
RYDHPEELGV WLNEDGYPHR PLAQQECLSY ARSGWCSLGP RCLRHHPLRP RPAARERG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre10.g460400.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DBU80.0A0A2K3DBU8_CHLRE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.15e-13floral homeotic protein (HUA1)