PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre12.g538801.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

C2H2

Protein Properties

Length: 491aa MW: 51075.9 Da PI: 7.7289

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre12.g538801.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	406	422	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sF+r+ +L +H++ Cre12.g538801.t1.1 406 GCGTSFPRHRLLATHQS 422 6**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MDSTGQPQLG SLSSFDPVPL PERRSLLTVN GADMSSSPGR SSRWRTQGSA AIIAPEPPRD 60 SPPALPSPRQ VSQLPGPPAG RFPPIYRTSL PGFPGSGASS CGNASNGALS LLVRSATDEG 120 TAVGRASDEK SLLRLAVSRA QGGGANHPGA PSAAARQRSS GPGSVFSDED TTPHASDGTL 180 PVDPVAAILE AQLEQYLVAQ ARKSPYGSPS QRRYVEQERE ALGEQASPGP DATEVPGPQV 240 GDMARAQSGP LLPSILSISS PTLAARKDCE LAPPSRLDIA EPEDEEARSS PGSRAAGHES 300 DTEVEHRRQR QDPTVAMGQP HAVLLTVARW PHSPSLGSNS TRVLHRLSYN GHYAGAVVPA 360 APVANTGGGS AGGCAVGSLA GGAEVGSPRL SLVGSGGAGP GSPLGGCGTS FPRHRLLATH 420 QSVDGTPSLL HKPLQQLDGL PYINPNHSEW KERRQELKRR LLSMPRVQHV EALRDPQLPF 480 LARVPDWNQI *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MDSTGQPQLG SLSSFDPVPL PERRSLLTVN GADMSSSPGR SSRWRTQGSA AIIAPEPPRD  60
SPPALPSPRQ VSQLPGPPAG RFPPIYRTSL PGFPGSGASS CGNASNGALS LLVRSATDEG  120
TAVGRASDEK SLLRLAVSRA QGGGANHPGA PSAAARQRSS GPGSVFSDED TTPHASDGTL  180
PVDPVAAILE AQLEQYLVAQ ARKSPYGSPS QRRYVEQERE ALGEQASPGP DATEVPGPQV  240
GDMARAQSGP LLPSILSISS PTLAARKDCE LAPPSRLDIA EPEDEEARSS PGSRAAGHES  300
DTEVEHRRQR QDPTVAMGQP HAVLLTVARW PHSPSLGSNS TRVLHRLSYN GHYAGAVVPA  360
APVANTGGGS AGGCAVGSLA GGAEVGSPRL SLVGSGGAGP GSPLGGCGTS FPRHRLLATH  420
QSVDGTPSLL HKPLQQLDGL PYINPNHSEW KERRQELKRR LLSMPRVQHV EALRDPQLPF  480
LARVPDWNQI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre12.g538801.t1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3D5C2	0.0	A0A2K3D5C2_CHLRE; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	Cre12.g538801.t1.1