PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre12.g550250.t1.2

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

CPP

Protein Properties

Length: 1361aa MW: 132686 Da PI: 7.8898

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre12.g550250.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.5	3.1e-14	31	67	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkk +Clk+YC Cfaag++Cs C C dC N Cre12.g550250.t1.2 31 TKRCNCKKARCLKLYCVCFAAGVFCSG-CACRDCLNAV 67 689**********************.******86 PP
2	TCR	45.6	1.4e-14	102	139	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +kkgC+C++s+C+kkYCeC+ a+++C+ +C+Ce+C+N Cre12.g550250.t1.2 102 HKKGCRCRRSRCVKKYCECYDAQVFCGGNCRCEQCQNM 139 89***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.7E-13	29	69	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	28.221	30	141	IPR005172	CRC domain
Pfam	PF03638	9.4E-11	32	66	IPR005172	CRC domain
SMART	SM01114	5.4E-14	101	142	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.8E-11	103	139	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1361 aa Download sequence Send to blast
MSRPRRTKDE DYDMGYDQDQ DFGYASLAGG TKRCNCKKAR CLKLYCVCFA AGVFCSGCAC 60 RDCLNAVETA DLVHAERSKK LAASPGAFAP KVGAKGEGEL AHKKGCRCRR SRCVKKYCEC 120 YDAQVFCGGN CRCEQCQNMP RGGAPPPGLP PALLQHHPAM GAPLSLPLAG ALPSGLLPSQ 180 LLMRSGSGTA AAAAGPGGFN LAALAAAAGA GASSSGLANQ GGAAASAAGG ASAAGTAAAA 240 ALMLEKAFGG QAMVDPLADM EASGADDDPH ILPRDPLAAG RAGSSAGGGK AAGAGAAGGV 300 GGVAARDGVR AGLPERQGHA VGGPAGPAAV AAPRPGLAAS LAGLGINLDS PSLAGITAAA 360 AAGAPGAAAT TTAAPPAPAA TATDMAAAAA LAAGEAVSGL PARWSAPFLN SPDTATAAAA 420 AAMVAEEGSG GPASQDAHGA SRNPFSSAFM SRAAAEAAAV AAGGSSNLDG ARQRGSSGGS 480 GGRCSSDGAE GAAGPGQAAG CMGGSSRDAA RERVTRRSSS DPEDAGPGVG ARRERGGIDG 540 TGSALPLMPA PAGDPAAVAA ANAGIDLSVA PLTMPSALAL VPGGMMGGGG GAASADGVAA 600 LQGMASAAAL AAASAAAAVA QSVATAIEAR NASGGGAGSG AGNSAAAPPP GDVPGAAGAA 660 AGAAGEALTL EMVVAAPALL LEDPARAEEV AARVGLDATL QMAARKAAHI LKSLLHMAQR 720 ACPVDQMMMM GGTASAATAG TAAAAGAAFP GDDALQQQQH ASTGFPGFSA PVAPSASHLA 780 SAAGALPHDT QQHQLHLQQH QHQQNQLQAY GSGALSQPPS LQHLAIPPLH VPAPAPDNLS 840 HMPYSHMSYS HMQPHGQELH AQPSLHAPLP SLQPQPSGTA AAGSVGGGAP ATSLLPGSSQ 900 QLQTQPSGGG IRSLHRTGSG GGAMRLGSGS FRFGGAGGPT PAATRPEPSA ADQPSAAHHT 960 LRTSNHSTAL PGRRGSEMGQ PPLSASGAGA RSGAGFAPTS SAQRHHNHHH YTNHRRQSDA 1020 TNGGTDAGGG LRRGSRVKRP NSLLADMEMH HDLDPDFDPS AAGPDAAGAC RQHHHAHLPQ 1080 GPDRRLPHTS YVFGTAAHAL GRGRSSAEPP SPKRSRLHGD EGAGGSRRGA AARRRRRGGR 1140 GGGAGAGYDS GATSEEYDDL LAEVEEEEEL ELGEAEEVVW GQRQRPASMR GISQSPIMRR 1200 RSELSNGPLS SGGGGSALLP PSLLGTNGGP KPNSIISPFG PGASLGTHHT YGGATGSAFL 1260 SGGGGGGPRP TTSEARTGAG GRKRRLSSGT AARRTSVDGD YFAGGGVAAV AGGRGGGGGP 1320 QRSCGLAAAE AEGLGVGLGA DGDSSELEAM QALVGLATAH *

Sequence ? help Back to Top

Protein Sequence Length: 1361 aa Download sequence Send to blast

MSRPRRTKDE DYDMGYDQDQ DFGYASLAGG TKRCNCKKAR CLKLYCVCFA AGVFCSGCAC  60
RDCLNAVETA DLVHAERSKK LAASPGAFAP KVGAKGEGEL AHKKGCRCRR SRCVKKYCEC  120
YDAQVFCGGN CRCEQCQNMP RGGAPPPGLP PALLQHHPAM GAPLSLPLAG ALPSGLLPSQ  180
LLMRSGSGTA AAAAGPGGFN LAALAAAAGA GASSSGLANQ GGAAASAAGG ASAAGTAAAA  240
ALMLEKAFGG QAMVDPLADM EASGADDDPH ILPRDPLAAG RAGSSAGGGK AAGAGAAGGV  300
GGVAARDGVR AGLPERQGHA VGGPAGPAAV AAPRPGLAAS LAGLGINLDS PSLAGITAAA  360
AAGAPGAAAT TTAAPPAPAA TATDMAAAAA LAAGEAVSGL PARWSAPFLN SPDTATAAAA  420
AAMVAEEGSG GPASQDAHGA SRNPFSSAFM SRAAAEAAAV AAGGSSNLDG ARQRGSSGGS  480
GGRCSSDGAE GAAGPGQAAG CMGGSSRDAA RERVTRRSSS DPEDAGPGVG ARRERGGIDG  540
TGSALPLMPA PAGDPAAVAA ANAGIDLSVA PLTMPSALAL VPGGMMGGGG GAASADGVAA  600
LQGMASAAAL AAASAAAAVA QSVATAIEAR NASGGGAGSG AGNSAAAPPP GDVPGAAGAA  660
AGAAGEALTL EMVVAAPALL LEDPARAEEV AARVGLDATL QMAARKAAHI LKSLLHMAQR  720
ACPVDQMMMM GGTASAATAG TAAAAGAAFP GDDALQQQQH ASTGFPGFSA PVAPSASHLA  780
SAAGALPHDT QQHQLHLQQH QHQQNQLQAY GSGALSQPPS LQHLAIPPLH VPAPAPDNLS  840
HMPYSHMSYS HMQPHGQELH AQPSLHAPLP SLQPQPSGTA AAGSVGGGAP ATSLLPGSSQ  900
QLQTQPSGGG IRSLHRTGSG GGAMRLGSGS FRFGGAGGPT PAATRPEPSA ADQPSAAHHT  960
LRTSNHSTAL PGRRGSEMGQ PPLSASGAGA RSGAGFAPTS SAQRHHNHHH YTNHRRQSDA  1020
TNGGTDAGGG LRRGSRVKRP NSLLADMEMH HDLDPDFDPS AAGPDAAGAC RQHHHAHLPQ  1080
GPDRRLPHTS YVFGTAAHAL GRGRSSAEPP SPKRSRLHGD EGAGGSRRGA AARRRRRGGR  1140
GGGAGAGYDS GATSEEYDDL LAEVEEEEEL ELGEAEEVVW GQRQRPASMR GISQSPIMRR  1200
RSELSNGPLS SGGGGSALLP PSLLGTNGGP KPNSIISPFG PGASLGTHHT YGGATGSAFL  1260
SGGGGGGPRP TTSEARTGAG GRKRRLSSGT AARRTSVDGD YFAGGGVAAV AGGRGGGGGP  1320
QRSCGLAAAE AEGLGVGLGA DGDSSELEAM QALVGLATAH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	6e-24	32	138	12	120	Protein lin-54 homolog
5fd3_B	6e-24	32	138	12	120	Protein lin-54 homolog

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1311	1318	GGRGGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre12.g550250.t1.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3D681	0.0	A0A2K3D681_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP323	15	30
Representative plant	OGRP993	17	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-31	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Cre12.g550250.t1.2