PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre13.g562400.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family B3
Protein Properties Length: 562aa    MW: 53409.1 Da    PI: 6.7233
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre13.g562400.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-15210304194
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k lt sdv+  gr+v+pk+ ae++   ++ ++++t++  d++gr +++k ++  +++s++y+l+ G  e  +  gL++gD++vF   ++
  Cre13.g562400.t1.2 210 FEKSLTASDVSGGGRVVVPKSIAEQYfpRLEAPSGVTISAADLEGRAYTFKWRFwvNNSSRMYLLE-GAGELHRNYGLEVGDVMVFA--QK 297
                         99**************************88899*******************88756666666666.********************..44 PP

                         SEE..EE CS
                  B3  88 sefelvv 94 
                         ++++lvv
  Cre13.g562400.t1.2 298 QDGSLVV 304
                         6776676 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-23209316IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-20209313IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-19209301No hitNo description
PfamPF023626.5E-13210304IPR003340B3 DNA binding domain
SMARTSM010193.8E-10210310IPR003340B3 DNA binding domain
PROSITE profilePS508639.587210310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:0048573Biological Processphotoperiodism, flowering
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MGDQVGGIVL PTTGDAGDGA GPPNFAALAG LLGGHPGAAA GFAPAPGAPG QPHPALSGLA  60
LSGMSHLAHM DPSTALLLSG LTAQQPGGGD AAAAQMQFLH NPTAAYAAAA AAAAAAAAAG  120
QPAGVPVVDH GHHHHAHHAH PVAGGADGGA SGVKVEHDGG GGGGVGDGGE ENAAVRAAAA  180
AAAAADPSDP EAVAAALAGR MAALGASVIF EKSLTASDVS GGGRVVVPKS IAEQYFPRLE  240
APSGVTISAA DLEGRAYTFK WRFWVNNSSR MYLLEGAGEL HRNYGLEVGD VMVFAQKQDG  300
SLVVAGRCAN KADMVKKQPV KRPNTAAAAT AAVQAQPGPA AGRGGGRDAR SGRTPARTST  360
PAAELAAPVT AQSPGAAAAA AAAAAAAATA AGVAMGGVRN GAGMGAGAGA AAAAADRGRK  420
RKGPGSGAGQ WAGGAVDGGR GGAARSGGRA GGGGGYPGYG YEGGAGVGAG GEEVCLSVLD  480
MEAPSDGVFR AVVLPANGTS GGHASTGAGT GGSSPGVGVG VALARNNRWT ATLDVAGELY  540
QAYFDCRDDA VEALTAAGAS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-2120431418130B3 domain-containing transcription repressor VAL1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446454GGRAGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre13.g562400.t1.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3CZ210.0A0A2K3CZ21_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41131011
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-21high-level expression of sugar-inducible gene 2