PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre13.g568350.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

bZIP

Protein Properties

Length: 1151aa MW: 114711 Da PI: 10.1621

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre13.g568350.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.6	4.6e-07	1069	1119	3	53
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 +kre +++NR+A+rr+R+R k i L +kv+e ea +++ +l+ ++ Cre13.g568350.t1.1 1069 TSKRELCRERNRSAQRRFRERQKDTIRILSDKVAEQEALIADMQRRLDAYE 1119 689*********************************999999999998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	1.12E-6	170	221	No hit	No description
CDD	cd14688	4.15E-8	1070	1115	No hit	No description
PROSITE pattern	PS00036	0	1076	1089	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1151 aa Download sequence Send to blast
MTLVGRHQPE DSYVAAGAPL VFRPLFKPKR PSDGMVSNAE DDEASAGMGP VINPSTLCPP 60 GDEHTNALLL SLMHNSAAAG GGRGGGGGTA AGSMQQHAKQ QAAHQQHMNN ARRSSGSASG 120 FAGGAAGTGG EAAFSGPTAD LVTASAKVMV ANFIAQVQAE SEAAVQAHIR QQQQQQQQQQ 180 QQQQQQQQQQ QQQQQQQQQH QQHQQQQQQQ QNMMLLQAGQ QRVLGGAGNH APPAIAALGA 240 VTPVHPAAIV FGAAGVSGGG DGGGGGNLAA AAAAGCASPI FGSPSLSAPQ PAAGATTLSG 300 QPLLLSAPST EAALFARTSG MSAPSPSLAP DPLPQGLHVM HGGMLGGGGG GLSGGLGGRL 360 GSGLLLGGGL LGGAAAGGPQ LQRLQSLPLS SAGLGYGMQQ PPLGGGTAAG LQLSDVGRMQ 420 QQQAAAALKL PHQQQMPPSR PQMLRELMQL QAQQQELQHQ QELQHQPSHR HHLQQKQLQQ 480 VALGFDTGGG GVVMQQQQHS DEYQQAQRQR HLLLLLHKEQ QAQRAQQLGM PAVGGGMTAE 540 EALMMRLRSA SAAAPLATAQ QLAQQPQLLA PLPPPPPPLP SQQLQQQQQQ QQQQLFHQQA 600 PLQLLRAQSK VEDDVMEDAV AAPPPPPPPP AAAALYAAAQ QALAAGGLAR GTRDEPSSGS 660 PDHAAAAVPT DARSGGPGAG VAGASGDDSS NNGGGGNAAE RGRGPGHPPA MVAAAPTPAA 720 NTAKASATAA LHPTGDVAKP SPAGGGGGSS RPVRAAAASR RNPADSEAAA TTAATAAASK 780 DRDGGSLPPS AMPAAEPAKP STMPAAQPAK PAVQGAPPPA AGAPNGAAPA GCSSPSQRQS 840 GNGKAAASSG TAEAAAAAPS KPAAAVAKAE LKQGAAGGDA DSGSQREVAG GASRQPQAAR 900 RASRRSAAAA AQAAAATPVA AVNNGNGAGS GSAASGGGAR AAARTQAPAA TATAGTAAAV 960 ATAPIASKGQ KRGSGVAGSG AAMPSGGGTS GGAGGGSKAA KKARRKGSVD EGKESAAEDD 1020 GEEEAEEEEE GEECNDDDST SSGGEGSARK RPRKASGAGA ATRRQPSATS KRELCRERNR 1080 SAQRRFRERQ KDTIRILSDK VAEQEALIAD MQRRLDAYER AGPPPAGKRP AAAAAAGRKD 1140 QQQQQQQGKK *

Sequence ? help Back to Top

Protein Sequence Length: 1151 aa Download sequence Send to blast

MTLVGRHQPE DSYVAAGAPL VFRPLFKPKR PSDGMVSNAE DDEASAGMGP VINPSTLCPP  60
GDEHTNALLL SLMHNSAAAG GGRGGGGGTA AGSMQQHAKQ QAAHQQHMNN ARRSSGSASG  120
FAGGAAGTGG EAAFSGPTAD LVTASAKVMV ANFIAQVQAE SEAAVQAHIR QQQQQQQQQQ  180
QQQQQQQQQQ QQQQQQQQQH QQHQQQQQQQ QNMMLLQAGQ QRVLGGAGNH APPAIAALGA  240
VTPVHPAAIV FGAAGVSGGG DGGGGGNLAA AAAAGCASPI FGSPSLSAPQ PAAGATTLSG  300
QPLLLSAPST EAALFARTSG MSAPSPSLAP DPLPQGLHVM HGGMLGGGGG GLSGGLGGRL  360
GSGLLLGGGL LGGAAAGGPQ LQRLQSLPLS SAGLGYGMQQ PPLGGGTAAG LQLSDVGRMQ  420
QQQAAAALKL PHQQQMPPSR PQMLRELMQL QAQQQELQHQ QELQHQPSHR HHLQQKQLQQ  480
VALGFDTGGG GVVMQQQQHS DEYQQAQRQR HLLLLLHKEQ QAQRAQQLGM PAVGGGMTAE  540
EALMMRLRSA SAAAPLATAQ QLAQQPQLLA PLPPPPPPLP SQQLQQQQQQ QQQQLFHQQA  600
PLQLLRAQSK VEDDVMEDAV AAPPPPPPPP AAAALYAAAQ QALAAGGLAR GTRDEPSSGS  660
PDHAAAAVPT DARSGGPGAG VAGASGDDSS NNGGGGNAAE RGRGPGHPPA MVAAAPTPAA  720
NTAKASATAA LHPTGDVAKP SPAGGGGGSS RPVRAAAASR RNPADSEAAA TTAATAAASK  780
DRDGGSLPPS AMPAAEPAKP STMPAAQPAK PAVQGAPPPA AGAPNGAAPA GCSSPSQRQS  840
GNGKAAASSG TAEAAAAAPS KPAAAVAKAE LKQGAAGGDA DSGSQREVAG GASRQPQAAR  900
RASRRSAAAA AQAAAATPVA AVNNGNGAGS GSAASGGGAR AAARTQAPAA TATAGTAAAV  960
ATAPIASKGQ KRGSGVAGSG AAMPSGGGTS GGAGGGSKAA KKARRKGSVD EGKESAAEDD  1020
GEEEAEEEEE GEECNDDDST SSGGEGSARK RPRKASGAGA ATRRQPSATS KRELCRERNR  1080
SAQRRFRERQ KDTIRILSDK VAEQEALIAD MQRRLDAYER AGPPPAGKRP AAAAAAGRKD  1140
QQQQQQQGKK *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	87	GGRGGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre13.g568350.t1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001693706.1	0.0	predicted protein
TrEMBL	A0A2K3CZK0	0.0	A0A2K3CZK0_CHLRE; Uncharacterized protein
STRING	EDP08960	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12398	3	3

Link Out ? help Back to Top
Phytozome	Cre13.g568350.t1.1