PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

Cre13.g590350.t1.2

Common Name

CHLREDRAFT_147286

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Protein Properties

Length: 335aa MW: 34514.9 Da PI: 4.6624

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre13.g590350.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	1e-09	118	172	2	60
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++++ er NR+A++r+RqRKk++++ L+ v++L+ + + +++ l+ ++++l+ Cre13.g590350.t1.2 118 RRIRTERQQVLNRLAQQRYRQRKKEKVQALQHNVDALQMQLE----RVSFLESQCDSLR 172 56788999999**************************99985....6677777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	3.7E-7	118	173	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.41E-6	122	178	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.1E-6	122	172	No hit	No description
CDD	cd14687	8.50E-8	129	178	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MELGLAESLG DADSLAAYLN GSFIGGGSLE QTLEAPSFLG ELAAITGSME APYAAAAPEL 60 PAELKPEELP STSGAGFLPQ SEAGPMSEAG LSADGGLMSE DDAEGGATSC KGGGKRRRRI 120 RTERQQVLNR LAQQRYRQRK KEKVQALQHN VDALQMQLER VSFLESQCDS LRGTVAQLGA 180 DLAAKDAGLA AAQAQLRQAA VLLKGAQDKC ASQERQLAEQ AQALEAQRSQ LRVSNLASLD 240 PQALSDRLLA LVKEAFAAAA AERSSEIDGS GMAAPAAAAA APSAPPPLAM SEEVVAALSR 300 SLTSCCRELV FASKGLGGKQ AAAEAPSVIP VQCC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	119	KRRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre13.g590350.t1.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001693067.1	0.0	predicted protein
TrEMBL	A8IW62	0.0	A8IW62_CHLRE; Predicted protein (Fragment)
STRING	EDP03636	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP10396	4	4

Link Out ? help Back to Top
Phytozome	Cre13.g590350.t1.2
Entrez Gene	5718630

Publications ? help Back to Top
Merchant SS, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science, 2007. 318(5848): p. 245-50 [PMID:17932292]