PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre13.g606750.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 5066aa    MW: 529528 Da    PI: 7.9099
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre13.g606750.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-09529126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ykt+lC ++   G CkyGd C+FaHg
  Cre13.g606750.t1.1  5 YKTVLCVNWEG-GSCKYGDACQFAHG 29
                        9********98.*************8 PP
2zf-CCCH28.72.3e-096489127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        +k+ lC+ +++ G C++G+rCkFaH++
  Cre13.g606750.t1.1 64 QKRQLCK-WHQVGACSFGARCKFAHSE 89
                        599****.9999*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.2E-14334IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-9430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.0E-6434IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6529IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-86192IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-56389IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.1E-56392IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8966390IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-76489IPR000571Zinc finger, CCCH-type
SuperFamilySSF484031.81E-2510451208IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-2810991209IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.97810991209IPR020683Ankyrin repeat-containing domain
SMARTSM002484.110991128IPR002110Ankyrin repeat
CDDcd002042.61E-1611001206No hitNo description
PfamPF127963.3E-1011041205IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01311381168IPR002110Ankyrin repeat
PROSITE profilePS5008812.60911771209IPR002110Ankyrin repeat
SMARTSM002480.001111771206IPR002110Ankyrin repeat
SuperFamilySSF484031.81E-2514421494IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-2814501494IPR020683Ankyrin repeat-containing domain
CDDcd002048.42E-914501494No hitNo description
PROSITE profilePS5008811.67414511483IPR002110Ankyrin repeat
SMARTSM002480.05114511480IPR002110Ankyrin repeat
PROSITE profilePS5029715.2214511493IPR020683Ankyrin repeat-containing domain
PfamPF136377.0E-714531495No hitNo description
SuperFamilySSF525401.22E-3320522165IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.1E-1020532171IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.22E-3323702476IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.1E-1023962472IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.22E-3325142639IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.1E-1025172525IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.4E-1325262644IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF133612.3E-726092716IPR014017UvrD-like DNA helicase, C-terminal
SuperFamilySSF525401.22E-3326962720IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.4E-1326972718IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0016787Molecular Functionhydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 5066 aa     Download sequence    Send to blast
MSARYKTVLC VNWEGGSCKY GDACQFAHGA HELRSRGEQV ATGLVVAPVR TTPKLAGQPA  60
QSLQKRQLCK WHQVGACSFG ARCKFAHSEH ELCAPGGAYG GSNSHGSAVS QNGGGAFPTS  120
PQPEAASSPT SQTPPPPPPP LPLPRLSPVE VHKIYKEALV AARSGDAVKV GSKAGELLAR  180
GPAPHYGLSR NQVADLIAAA TAEYPSLPCL KALLPLAQPF GDWTLLHRQY PTASHQQATG  240
QAVYCGLLHQ AALMLLEWHK AGLAQAATTG LEVLRAICAA RPAAVVDMKA PGILSTPLET  300
VLLAGQEPRG FVARLLREVS PITWLHTAPG HAAHLRAVEV CEALADDEGC LVARNLGFSQ  360
AYFLTCASVL QGIYDRKRPA SASYEAVPEP VPPPASGYIQ LPALEIPGIS RTFTGVRTGA  420
PPPPPPPHAA ASSASGHVKV HSQPATAPAA GSTASSSSVA KQPHTQQLQL PSGARSGAAS  480
SASSVQKGPV AAAVKTTVAS AAVAAAIGGA VAAGQRGARQ RQQPQQDDDD DEEGPPALLD  540
DNSSDGDGDS SGSEDLLGLL LQQKQPPNSK AALKQQTAGK QSNGAAAASS GFARGFLGGG  600
GASTGAAAGA GGKAAGPAPQ PAAASKPQGQ QQNAMQQQGQ QARQSQQQQQ QQQQQQQQQA  660
QAKPASGGLA RGFLAGGATG SSGTAQAAAS AAGKAPAASA TGASAGAQAL AAKRAAGSAG  720
AAAAKTVVAA PAAATTPAKP ATAQPAKAVA AAAAAAAAKP LAPPPQPAGA QVLRALLAEL  780
TAAVDANAAG KVADVVKRLN KETAACTPPL PVEKAIQAPC FAATHSAKQK VGDLTPLTIK  840
DDPLWAAENA ARAAAESAPQ AGLLAELLAA LRKCTWRAVL GHMSLSMLQE LRIINIPCGI  900
PWWPEILRDA SVPADQPSPS LFEMLLEKGG AVASDLAAGL VEKHSYVLLY ANKSPVCLAL  960
TRKLPLNDTD YIFRMSLAYR SKEKGGAARE TLTAELQLPD PAAPQGWRRR QVSATAFGWW  1020
ALLPHCSNDA RVLSTLRAKV DPKVELPAFE GLPPLHVLVQ YGRRPWDGVA TVATDRRLSA  1080
LLFTDEGVLI SRLLEQVAGG ITPLYRAVRV GDIPAVTWLR QRGASPLVSC TEEGAGGYSD  1140
TPLHLAVTRK SAEAVEAIIK HSAPDILKKL DTTYDSDGAT PLMLAAELGY TRIVDLLLAA  1200
GADPSLLHDL PNKGASKSKK GGAAGSTDAP RGTHQSVLSR TLQLQEAEEE RRKKQGSNGQ  1260
AQGDAKKPNP HDAVLEAIIS SWKPLWSGAA LQRELGPDGC ARVRAWLLQH ADTTLWPVIK  1320
EMGAGGVSPG VLTASLVALL LEVCRTAGGA DWRVPGTTDP FKPAGEGGSG SSTWTGPKGT  1380
HPPRSQLSVW SLVPESAAAQ DHAKAIAAKE GSGSLAPAWL TLPLLREMLQ RGLASPHERL  1440
PSYGIMSELS KGSTLLHKAC FIGDLDMALL LLEAGADWSR KDDNGNTVLH YVAMGSAGYG  1500
ESRVLALWRL FMWGRAEGIA AGGGKGSAAA ASALPPLLID PERLALATAT NTKKRMPEDL  1560
AAAKIKPALK TEIQALKQRV NAKLKNQEAA AKAGGKATGN SSGKADSKAG AAVAEQPAAD  1620
AGTAAAAAAP EAPGAAAAPA VAVLSPAEQL KALLADDEAL ASAPLAQLVG VPEESALQLA  1680
TRLAKALPGT LLRGKRAAGA QGAGGGEDGG GGDGGDDGLS RLRAVVEELR EEDDEQENGD  1740
DGAEYSEDDA PPPGEELLED EDANAAAMRG VAGDAAAASA AAASASSSGS AAANGGAAQA  1800
VAAATDFDNH PLRNLAWPLL ITKEAIAGWG TLNDQWRKLV MARLRVIGQG LWPRCRGAKR  1860
ITSDDPLLMP QELWRLKLTK GGRILFEVAV DDHDSKGTFC EIIRVWCITL NHKEYEVMIQ  1920
RVQRSFTNSL RMRLRKKLQP LEQEGPAAAA TAAGTKKAAG AKAAAAGVVA AGGDRTRTRL  1980
PRFYKEAGLV DGSGAGDAGG SKGQEQGQVM VLREHYPPAS WADDTYTTLK FYTVDGLLVK  2040
AVMSGLAEAQ VDFMFKLSPQ ERDLITMVPS PPSSIILLGR SGTGKTTCAV FRLWTAWLAP  2100
YLSRAHETPH TVFVTASATL REQVARAFRK LQRAALRDHE WERASAAFNT TYHTFKDVPP  2160
EAFPLFLSSR TYLRMLDGTT ERPFFPRAAN GSIIQVAGDG EEADPDGAAL VVALNEDLSD  2220
EEDEEDGAAA DQERQRGGPD EDGGGQEGGA ALFEEEVAAA DAARREEAAR ARLLMDMEGA  2280
EAGGAADGYG LGVAGRARLN REVTYQHFVS AMWPKITTPE QRNQVAPGRV YQEIVSYIKG  2340
SAEAISSPDG HLSREQYMAL GRKRAANFSA DMRGDVVWPI FEKYERLKRQ EWRYDMLDLV  2400
GHIYREMTTT PGGYAGTPVH ALYRDEVQDF TQGELLLDMV VAADPNSLFY CGDTAQTIAR  2460
GIGFRFADTR TLFHEENTRR QEAAARRLAA EAADEESVGK ALARRGHGMT IATPPVLQLT  2520
MNYRTHQGVL DVAAVVVEAL RRYFPLQIDK LERESAQFPG PHPLLLGSIS ADDLTYLLSG  2580
SDKKTSQVEF GAHQVILVRS MAAVDQLPEE IRDSNAIIMT VPQAKGLEFD DVFLVDFFAD  2640
SQATAEWRVL CSYLAELQER GGKGLDGFQY GLQQVAPTDP GAVRPLELNE GTHVVLAEEL  2700
KHLYTAITRA KNNVVIFDRN AAKRAPFYHL LQSLGMARTV HKSLLEDGAD AAKFGLTQKA  2760
TSSRHEWAKR ARNLMGNRNY AMARKAFLQA EDQVRAEVAD ALLKRQRAGQ ESMPDVDKRR  2820
LLAAAALQLL AATARCGESP DPVEPEELRR WVREASKFLE GCGKSIEAAQ LKFKLGTQRA  2880
VAAALRLLVD AKEYAAAAEC CVHMAAAELA AARARAAEED AAAAGSMQRL LMTEAELAAQ  2940
REAQAHQAAV PWLAKAVEQF QFAGNSTAVL ALLAPPGFGG SKGSATGAHA PLAAAAGIDS  3000
EDDDDAAEDA AEDAAEDVEE DEQQQRELEA QERTGPLALF APLAPRLHAM LARRWQGYGQ  3060
ALRAAAIALH SRGSLRRAGA VARLVPMPQE RDTLLETLGY WRARARARSA VDPLGAAQVL  3120
LEHGDTRRAV RLVLRCLEPL PASSGGMEAA EAGGAGGGGD RLTRAARQQQ LYELQLRQEH  3180
ERRQKQVLEA NALAVLHRLV AAQTKAAEAT QLRRALEAWM ARQAKSEEGG KEGEEGAGLT  3240
KRMLPIRGHV LLLEARLLLE PWAAAAAGGA KGAAGDSKEQ QAAAAAVATN AALRDAAWLE  3300
ARPLLLTAVE CFLRCDQWPG FMEAAELLLR AAPDAAVASH TAAGQLADFE QALLQAMQRG  3360
AERAGDSATV AAAASSRTAA AKQALARSLV VPEAALKLMR TTQTACDALS VGLGSSAGSN  3420
VSLRPGGGLV GRAGGGGERS RAGAASSLSK PQQEALSALE GLLLLPGLSR PTEAKLSARN  3480
ASHSWWAALG QQNTDAVRRA AGPKAAAGSG QDGKEKEKTS GQSSWAAVAA KGAAATAMVW  3540
DPEVPALAPT SHLLLRCHQT AMALGEGGAM AAAVEAAGAG ASQMPLPRAA VAAVAARSLT  3600
IRAACLAHLA ARGALAAYLH PAPPPQPALP AGAGGKAAEE GTEGDAGKQE QPAEAAAPLS  3660
CEVVLDRLRP LVCAARAVHL AKMMVGSVGQ AFSMAAAASL RKCLDAQLRY LAAALVAASL  3720
PPAAAPELLA ELLQPRPQPQ RRPGGGGGPP RRVMGDLLEL LARDGFPHRE LADWAEHLLV  3780
RCMPLELRMP LAPAVSYLAC RTMMLVAPDS EDRASKLWLI KDSSAKATGD VPPERLVHDD  3840
KKTGPAEALL VSAFRAMDSS PLRAVGDLLY YLAWCARRDG LAAVTPTDAA AEGAQAPAGA  3900
AAGGSKPGSG AAAAAGPVGL SLPLEAYAEL VEVTVGQLLL AACDNALLPG NVAGTLSGLP  3960
RVSDPQAGLN GVADTWAREL GFRGPAVGEG AGGGGGSGWG WGRGRGPSPK EVAEAKARAV  4020
TARKEVAGQL RLAARMTLLL ASHIDQRLQD TAAPAAGGAG GDSAASPPEL ELLQQEVLPL  4080
LDAPGRREAH ELLRQPGGPG AQPRRAQGKS RGGGAEAGVG SGASVAPPSA GASGLRLRAI  4140
AQRVLLAAGA AYVSLELQES VVKPQRQQQK AAAERQQKLA GGGPVPEPPP LRGGWPAEAS  4200
AGFRDACTLL QARVAPACFQ PATGATDLAS VAQAADALAR LSQRVCYPSS RLSTGMRLVG  4260
PDANREYEGL SGARPPKGPL ALLFQAAQAK MQLPKAAADA GIGGRVKAAS DAVARVAARD  4320
FQATEDERVR QRHAAAVIQK RWRAWRQRRI EAAEAMRRRQ LQANALETLR RSIRFRVWVR  4380
ARLANARKAL DARHFGERFT AGCAAAVQFG EQALHMADIE AVLKARFVQL DRCPVCSGET  4440
LRKQTEELKQ QMAQRAAGKL KGAAAEFRPH KNTVDHLEAA NSFTTFRDVY NGDLPTRLGG  4500
SAAHMDQLRA SLDRLEQLGV SDASLIKGRL VAEADLALRG VEQARAALEA SLRQLVEERV  4560
WDVGVLASRM FPQYTSLDAA VQRVDMMRVH VEGLAAAARR TALLPPDEQL AAIQPKQQPQ  4620
PQLQQPQEQD QHQEQEQEQA LRLPSGEVPE QEQAQEQVQA QEQQPVGVFA AGLDVRPADG  4680
MAAHAAAAAA SPAKQAVPAL EGPPGTRPGL QQPFSSPTHQ QQGSAWAAQK PVIQFTPPPM  4740
PPMPSALLQQ LSQGQGQSYA VAAQAGAGGQ AVSPYSNQSH AQAAHTMGYN QVYGGLGGIG  4800
ADLPPGLSQT PGYGAAAAGS TAGYAASGFA PPNFTAQAGF PFQQQQQFQQ QQQQQQQYQY  4860
LPHMQQQQQQ QQQQQYQPYL QQQYQPPSPG MNASMVSPGG MPGFMPQQYG IGYFPSGAAG  4920
GGAAAGMQGV AAAAAMGAAA QFGAMGGAGG FPAGEPGTDA ILQGALMEDD DEDDDEWQQS  4980
RRHGRYDGGG RGGGRGGRGR GHSAGPHGSP YGPPGRGPGG GGGRGGRGAG GYGGGYGGGR  5040
GSNVYEALRG ANATPSRAAQ RMGLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre13.g606750.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001699146.10.0predicted protein
TrEMBLA0A2K3D1I20.0A0A2K3D1I2_CHLRE; Uncharacterized protein
STRINGEDO990010.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP554022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.15e-09C3H family protein