PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

Cre16.g672300.t1.2

Common Name

CHLREDRAFT_184386

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Protein Properties

Length: 207aa MW: 22663.3 Da PI: 10.9468

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre16.g672300.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	23.5	1.6e-07	36	103	94	163
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 ++++++ + ++ ++ ++p+v +P k r+Psayn f k q+++++nPd e s Wa + Cre16.g672300.t1.2 36 AKKATKPAKAEKAPKAEKAPKVEKP--KAMRAPSAYNLFYKAIFQQVRSENPDKKVTELGSKVRDKWASI 103 3444444566666677777888888..7899************************999999999999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47095	1.44E-13	49	123	IPR009071	High mobility group box domain
SMART	SM00398	1.9E-9	61	131	IPR009071	High mobility group box domain
PROSITE profile	PS50118	11.017	62	130	IPR009071	High mobility group box domain
Pfam	PF00505	2.1E-13	64	127	IPR009071	High mobility group box domain
CDD	cd01390	1.03E-9	64	121	No hit	No description
Gene3D	G3DSA:1.10.30.10	6.0E-12	64	121	IPR009071	High mobility group box domain
SuperFamily	SSF47095	2.23E-17	132	199	IPR009071	High mobility group box domain
SMART	SM00398	1.5E-11	135	198	IPR009071	High mobility group box domain
PROSITE profile	PS50118	14.048	136	204	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.6E-15	137	202	IPR009071	High mobility group box domain
Pfam	PF00505	4.9E-15	138	195	IPR009071	High mobility group box domain
CDD	cd00084	2.27E-11	138	199	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MLRYAALRTV PRAIAPARRA MVIRSFSESN DAAPPAKKAT KPAKAEKAPK AEKAPKVEKP 60 KAMRAPSAYN LFYKAIFQQV RSENPDKKVT ELGSKVRDKW ASISALERAP YEAQAAARKK 120 EVDAKRAEVL AAKKAAARPV TAYIAFANAK RPEIKAQNPD KTMAQVASLL GSIWKGMSEE 180 QQKPYRDQAK AAMDAWKAKQ QAQQSA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Cre.7719	0.0	nutrient deficiency

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre16.g672300.t1.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001695913.1	1e-141	high mobility group protein
TrEMBL	A8J3F0	1e-140	A8J3F0_CHLRE; High mobility group protein
STRING	EDP01250	1e-141	(Chlamydomonas reinhardtii)

Link Out ? help Back to Top
Phytozome	Cre16.g672300.t1.2
Entrez Gene	5721401

Publications ? help Back to Top
Merchant SS, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science, 2007. 318(5848): p. 245-50 [PMID:17932292]