PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre16.g680050.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family NF-YC
Protein Properties Length: 650aa    MW: 62085.3 Da    PI: 7.9661
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre16.g680050.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.42e-158842297
               NF-YC 22 Pl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
                        Pl +rikk++++d+dv +is  +P+l+ +a e+f+ +l  ++ + a++ + +tl+ s ++aav   ++ dfl + v 
  Cre16.g680050.t1.1  8 PLaTRIKKMMQTDDDVGKISQATPILIGRAMEMFLEKLCTQAINVAQSRQAKTLNPSHLKAAVGADKTMDFLAELVA 84
                        6636********************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.62E-1811100IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.4E-231183IPR009072Histone-fold
PfamPF008082.4E-161170IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MKARKICPLA TRIKKMMQTD DDVGKISQAT PILIGRAMEM FLEKLCTQAI NVAQSRQAKT  60
LNPSHLKAAV GADKTMDFLA ELVASAPDLP PPDAEGEVGP KPIKRRKTND LGEALGSPTG  120
GRGGGRGAAA AAAVAAVAAG EDGEEPPPKK RGRPPKAPAA AAASGDEGSE QPPSSGRGRG  180
RGRGRGRGRG RGVRAGSTES DPGAMDLGSP FANTPGSAAL LAPPPPPILS FASPPPVHMD  240
LGLPFASPPA PAPAPAPATA PAAFAHGDPV ATSTTVAAPP PPLTAPEAAP LAAPEPAPTT  300
GVTGVAPLPP STSVPAPPTA PKPAPAPATA GRPAASTSTA PGGGGAGGGG GGGGSIIASL  360
RAQQPFFGLG RKGKNLGVGS KAQPAAGAGA AGGSGAGNHA AAPANAPPAG SPISGEALAA  420
AAAAALAAPH TFAHKLEPLD LSGPARPFAA ADYGMTPGSG SGGGSGFAAE AAPASARGHS  480
PHGAPPASTG GAVSIKHECE DTTAVNGWEA DGLGSSGPST TALSPFQVRQ QAKAAPGPCG  540
ERNAGAGAAV KAEADGQSSA AHHGNGGGAA AQDGRDSGVA AAPPQLSVVG SCPVPSLTSG  600
SAASLGGTAA ASAAAAAAAA TAAPPPLVPP LPFFPVPQQQ DMEEDDYDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A8e-1312701674Transcription Regulator NC2 alpha chain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105PKPIKRR
2180190RGRGRGRGRGR
3182191RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre16.g680050.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3CV510.0A0A2K3CV51_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP33431313
Representative plantOGRP21791635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.13e-24NF-YC family protein