PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa00382s220.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 187aa MW: 20463.6 Da PI: 6.2204

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa00382s220.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	82.3	1.2e-25	16	132	10	89
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.....eaesssssasnsssg...... 88 k T+ R RR+Rl++ ca ++F+L++eLGf++d++t+ WLl+ a+p i ++tg s s+c + ++ss++++ s g Csa00382s220.1 16 KTPTSSRDRNRRIRLPVGCASQVFQLTQELGFKTDGETVGWLLRIAEPDILAATGHgvnttS----SDCihpciNIHNSSNMNQ-LSFGnnctid 105 66789999************************************************865441....233333342222222222.1111223343 PP TCP 89 ..........................k 89 Csa00382s220.1 106 nsvhyadtsavvsqahqrenitghhgL 132 333332222222222222224444440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	15.186	12	68	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.7E-21	18	122	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MVLRNNKNNI GGKARKTPTS SRDRNRRIRL PVGCASQVFQ LTQELGFKTD GETVGWLLRI 60 AEPDILAATG HGVNTTSSDC IHPCINIHNS SNMNQLSFGN NCTIDNSVHY ADTSAVVSQA 120 HQRENITGHH GLVSPAATMS TDYGHSTSFP ENSMPHQQPQ PQPLDDEFDE EEMGMAAQTY 180 AIPREY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa00382s220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010495846.1	1e-140	PREDICTED: transcription factor TCP16-like
TrEMBL	D7LNL1	1e-61	D7LNL1_ARALL; Uncharacterized protein
STRING	XP_010495846.1	1e-139	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16163	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	8e-29	TCP domain protein 16