PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00441s040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 718aa    MW: 78842.5 Da    PI: 5.0181
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00441s040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.43.3e-3699188398
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     f r+wseeDei+lLqG+idfka++g+sp+dd+++f+  +k+sisf++sk+q+veKir+LK+K+ k ++        sf k+hd+k+f+l++ iWg
  Csa00441s040.1  99 FARIWSEEDEISLLQGMIDFKAEKGTSPYDDMNGFFLGAKDSISFDASKTQFVEKIRSLKNKYFKGKDS------RSFLKPHDKKCFKLASCIWG 187
                     89*************************************************************998877......8******************9 PP

          DUF573  98 s 98 
                     s
  Csa00441s040.1 188 S 188
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.5E-2899187IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MATKKVLNFL EDPPSASSSS DEEEVESSSS GEEEDEEEQQ QLSISDEHKD PSPKPLKTPS  60
TTAAAAAAQS SGSAKKRASE EENEEHAKRA KTLSQKSPFA RIWSEEDEIS LLQGMIDFKA  120
EKGTSPYDDM NGFFLGAKDS ISFDASKTQF VEKIRSLKNK YFKGKDSRSF LKPHDKKCFK  180
LASCIWGSDD GVALLDSAPV VTVAVISSNK VDKKKKLEFG DEEMQVLGSD DGMALLDSAP  240
PVKSPPVAVT PAVKSPPVAV ISNKVDKKKK KKKLEVEDEE MKVLGSDDGM VLLDSTPAVT  300
VAVISNKVDK KNKKKKKKKL EVEDEEMLGS DGVESAEVVK AKVDMVEEDK EVVILDGDSE  360
SSDLFDKSFV VPLIVSLAGV NECSLKQKWS KMPVETKKRI EDKLKLVEAK EFELLLLKSD  420
IVKEVASKKE NMRRNCCHVS FATSLKILNF VQAFIGVSII IYSIWMLHEY NRHLPVDPPP  480
AASSSSGIEI PKVSEPLKNP IDYMASIVLG SSGGDHGFNL RSLDLPAPWF IYSFMAVGIL  540
VCIVTFIGFI AAEAINGCCL CFLLEIWFVA VFSLTVLKYS ILKTLLILLE AALVAYIAID  600
RHWEKDLPYD PTGELSTLRA FIEENIDICK WVGIAVVAVQ LLSLLLAMVL RAMVSTPKPE  660
LDEEEGYENP RVRAYDPLLG PQGNQASGGS SKIENWSSRI REKYGLNQSQ AAVNPKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265273DKKKKKKKL
2309317KKNKKKKKK
3312318KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00441s040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0545701e-158AY054570.1 Arabidopsis thaliana Unknown protein (At2g20230; F11A3.22) mRNA, complete cds.
GenBankAY0646621e-158AY064662.1 Arabidopsis thaliana unknown protein (At2g20230; F11A3.22) mRNA, complete cds.
GenBankAY0884751e-158AY088475.1 Arabidopsis thaliana clone 6967 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495915.10.0PREDICTED: probable transcription factor At1g44810
STRINGXP_010495915.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00238.13e-32DNA-binding storekeeper protein-related transcriptional regulator