PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00441s100.3
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 230aa    MW: 26438.2 Da    PI: 8.9237
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00441s100.3genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-0691114226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C+ G +CkF+H+
  Csa00441s100.3  91 KSILCEFFKA-GQCQKGFKCKFSHD 114
                     6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.27289116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-689114IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-589115IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-491114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-591114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.793160198IPR000571Zinc finger, CCCH-type
SMARTSM003563.1160197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016459Cellular Componentmyosin complex
GO:0003774Molecular Functionmotor activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMPPKQQPKA DLAKKQKQVE DKTFGLKNKN KSKNVQKYVQ SLKQSVQPKP DASKAAAKKK  60
KDEEKAREQE LNELFKVAIS QPKVPVGVDP KSILCEFFKA GQCQKGFKCK FSHDLNIQRK  120
GEKIDIYSDK RDEDGDMDEW DQETLEKVVE SKKNEYNQNK PTDIVCKYFL DAVEKKQYGW  180
FWSCPNGGKE CHYRHALPPG YVLKSQMKAL LEEESSKKMA VEDEIENEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00441s100.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065696e-93AC006569.5 Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence.
GenBankCP0026856e-93CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416033.11e-166PREDICTED: zinc finger CCCH domain-containing protein 21
RefseqXP_010489069.11e-166PREDICTED: zinc finger CCCH domain-containing protein 21 isoform X1
RefseqXP_010489070.11e-166PREDICTED: zinc finger CCCH domain-containing protein 21 isoform X2
SwissprotQ9SK741e-165C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLR0G5K71e-164R0G5K7_9BRAS; Uncharacterized protein
STRINGXP_010416033.11e-166(Camelina sativa)
STRINGXP_010489070.11e-166(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-151C3H family protein