PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00579s030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 216aa    MW: 24797.2 Da    PI: 10.3812
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00579s030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-135496347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +++ eE ++l++a+k+lG++ W++Iar++  gRt+ ++ + w k+
   Csa00579s030.1 54 AFSDEENKKLLEAHKELGSK-WSKIARRFH-GRTDREVHNQWDKL 96
                     79******************.*********.***********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-73459IPR009057Homeodomain-like
SuperFamilySSF466892.17E-2035106IPR009057Homeodomain-like
PROSITE profilePS5129416.36347101IPR017930Myb domain
SMARTSM007171.4E-105199IPR001005SANT/Myb domain
CDDcd001673.73E-85497No hitNo description
PfamPF002493.3E-115496IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-1460102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MNALLRRSDK VKEKQVRRWT FLEDLKLKGL VAICAKTCRS RWFNHLDPRI NDDAFSDEEN  60
KKLLEAHKEL GSKWSKIARR FHGRTDREVH NQWDKLMKQK LKKPSTPPHQ VTANDKTEGF  120
IDSVRDENTK INNSSLKIPQ EETTNYLRSK HLTEAMEYSA RHHHFSNLIP TVSLAMFTPH  180
VPISQPSSSS LPSKANDTKA KIPPKFIDFL GVGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-171110122108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00579s030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496521.11e-160PREDICTED: transcription factor MYB35-like
TrEMBLD7MJE01e-49D7MJE0_ARALL; Uncharacterized protein
STRINGXP_010496521.11e-159(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1909957
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.22e-32myb domain protein 110