PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00595s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 163aa    MW: 18961.1 Da    PI: 6.8798
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00595s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.46.5e-1371120554
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     +++rrk +NRe+ArrsR RK+ +++ L   v  L +eN++L  +l++  +
  Csa00595s010.1  71 RKQRRKVSNRESARRSRMRKQRQVDDLWSQVLWLRNENHQLLHKLNRVLE 120
                     689*****************************************999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.6E-1167131IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.58869132IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.29E-1171121No hitNo description
PfamPF001703.8E-1171123IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.6E-1071144No hitNo description
CDDcd147021.53E-1772122No hitNo description
PROSITE patternPS0003607489IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MQPSMNIFSL HGCPPSYLSH FPTSSPFCVE GQNPNPFYTF QTSVNSPQFM SLSNSTSDEA  60
EENHSDIVNE RKQRRKVSNR ESARRSRMRK QRQVDDLWSQ VLWLRNENHQ LLHKLNRVLE  120
SHEKVIEENA QLKEETSELK HVISDMQLQI QSPFSCFRDD VA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18390RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00533DAPTransfer from AT5G38800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00595s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496567.11e-118PREDICTED: basic leucine zipper 43
SwissprotQ9FMC21e-93BZP43_ARATH; Basic leucine zipper 43
TrEMBLR0H2484e-99R0H248_9BRAS; Uncharacterized protein
STRINGXP_010496567.11e-117(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.14e-96basic leucine-zipper 43
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]