PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00631s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 276aa    MW: 31498 Da    PI: 7.5889
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00631s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-075880426
                    ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                      C++f+r+G Ck G  CkF H+
  Csa00631s010.1 58 TVCPNFSRFGLCKSGQACKFDHS 80
                    68********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.488936IPR000571Zinc finger, CCCH-type
SMARTSM003560.071935IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-65280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2355482IPR000571Zinc finger, CCCH-type
SMARTSM003560.00225481IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-55880IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSDKKMPTRP GIPECSNYLL TGNCDLKECK YHHPMNTTPI ESGLALNNKG LPLRPNQTVC  60
PNFSRFGLCK SGQACKFDHS SSSEKRDLEE FFHSVEDRHT EYRDRLAASE QVQCELLLKL  120
ELLESHPKDW IENGFNCIAT LPPCLIAYCN KCREEASLRP TQTDPTLISD FVPCDVKPFY  180
INRRANETDL AEAHTFFLQG RIDRQLKNLE SETAILKAKR KRTTDLLDEC KQKARALETR  240
PEDWEKTGLQ LLWPMPKRLK TSVREIAASG ALVWN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00631s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418412.18e-95PREDICTED: uncharacterized protein LOC104703998
STRINGXP_010445142.11e-100(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.15e-34C3H family protein