PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00654s050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 224aa    MW: 24955.1 Da    PI: 4.1075
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00654s050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-18656155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr +k +g+WvAeIr p++   r r++lg+f +ae+Aa+a +aa  +l+g
  Csa00654s050.1  6 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFESAEKAARAFDAALYCLRG 56
                    79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.30E-28666No hitNo description
PfamPF008473.0E-11656IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20765IPR016177DNA-binding domain
PROSITE profilePS5103221.707764IPR001471AP2/ERF domain
SMARTSM003803.3E-29770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-29765IPR001471AP2/ERF domain
PRINTSPR003673.7E-9819IPR001471AP2/ERF domain
PRINTSPR003673.7E-93046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEAASPKYTG VRKRKWGKWV AEIRLPNSRE RIWLGSFESA EKAARAFDAA LYCLRGPGAR  60
FNFPDNPPVI TGGRSLTPQQ IQVVASRFAC EEEEDQLVPP QPSPPRGDQK TEEEEEEEII  120
SARGGMSGGN GGPMLGQVEQ GNNNNEGTNS SNDTSSYWPF IWENENLVGP QTSGDFGFFT  180
DDDSTNLYFP TQQPQQQLSS DFYYDDGACE DDFSHYSINL WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-153721080Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00654s050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496785.11e-166PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5911e-112ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLD7M0S11e-112D7M0S1_ARALL; Uncharacterized protein
STRINGXP_010496785.11e-165(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-90ERF family protein