PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00734s020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 243aa    MW: 27545.1 Da    PI: 4.4707
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00734s020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1183.6e-372075661
          zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +s
  Csa00734s020.1 20 PACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 75
                    58**************************************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-251969IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.2862074IPR003851Zinc finger, Dof-type
PfamPF027011.6E-312174IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102258IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEIIPEEKWK LSYGQEVTAP ACPRCASSNT KFCYYNNYSL SQPRYFCKGC RRYWTKGGSL  60
RNIPVGGGCR KRSRSRHNSH KRFGRNENRT DGLINQDDGT QSSPAGSDID LAAVFAQYVT  120
DRSPSSTDNT TGSDQDSPVT TTTNVLDSLS WDICQETEVD LGFYGEFNHL SDKTEEDQRG  180
FGQFLQEDRE EIFEFQGLLD DKELQEMLEC SFTEEPDQLI SQGRFMINGD NWSSTDFTRF  240
GI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075KRSRSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00734s020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0154470.0AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4462680.0DQ446268.1 Arabidopsis thaliana clone pENTR221-At1g21340 Dof-type zinc finger domain-containing protein (At1g21340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498588.11e-173PREDICTED: dof zinc finger protein DOF1.2
SwissprotP683491e-160DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLR0GT631e-163R0GT63_9BRAS; Uncharacterized protein
STRINGXP_010496868.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.11e-151Dof family protein