PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01172s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 194aa MW: 22284.3 Da PI: 10.0664

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01172s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.5	1.1e-20	9	52	7	50
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 s v +s+R+++++ KAe LSvLC++ev+vi+++++g+l++++ Csa01172s010.1 9 SYPLVALSNRLETLFRKAEQLSVLCQIEVCVIYYGPQGELQTWP 52 555699*************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	6.93E-13	13	87	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.077	13	51	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-12	13	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MRSLPSSSSY PLVALSNRLE TLFRKAEQLS VLCQIEVCVI YYGPQGELQT WPHEIEKVRD 60 MCVRYSRLNE SLRSKKRVNL SEFLKDKDKG LENPNKRRKT SSPKKNVDVL KYPISDHYSP 120 DQIPQLIQSL QLNISTFQRR LRFLESQEKH KLLDHHHQSL ASSSSLTTHS LNPSLHQSLA 180 SSSSLTTQSL NPSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01172s010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010497002.2	1e-127	PREDICTED: agamous-like MADS-box protein AGL75, partial
Swissprot	Q9FIX0	2e-52	AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBL	D7MJH9	1e-65	D7MJH9_ARALL; Uncharacterized protein
STRING	XP_010497002.1	1e-126	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38740.1	8e-52	AGAMOUS-like 77

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]