PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01575s020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 136aa    MW: 14582.2 Da    PI: 10.1652
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01575s020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00017092223
                    EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                    +Cp Cg  Fs+  +L+ H  + H
  Csa01575s020.1 70 VCPQCGAKFSSVTSLVEHVEKtH 92
                    6*****************99888 PP
2zf-C2H221.46.6e-07107129223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C++ F+++ +L++Hi + H
  Csa01575s020.1 107 VCPKCSRGFRDPVDLVNHIERdH 129
                     7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.016992IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.456997IPR007087Zinc finger, C2H2
SuperFamilySSF576673.92E-570125No hitNo description
PROSITE patternPS0002807192IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-47392IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.9106129IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954106134IPR007087Zinc finger, C2H2
PROSITE patternPS000280108129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MGFLSSSSSR KEAKTTRPNK ASASTSSSSS TSRWSNLLSS AEAGISRLGN DISQKLQFSS  60
SSSNDGIIEV CPQCGAKFSS VTSLVEHVEK THERNKKQIH GKVTVDVCPK CSRGFRDPVD  120
LVNHIERDHR GTSKA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01575s020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023391e-128AC002339.3 Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete sequence.
GenBankAY0652721e-128AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankAY0966201e-128AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankCP0026851e-128CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010497091.14e-94PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ424e-70SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A178VRV31e-67A0A178VRV3_ARATH; Uncharacterized protein
STRINGXP_010497091.11e-93(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.18e-67C2H2 family protein