PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g001480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 464aa    MW: 50471.8 Da    PI: 8.8495
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g001480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32201257259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK++kg e+prsYY+Ct+a+Cpvkkkvers+ d+++++i+Y+g+H+he
  Csa01g001480.1 201 DDGYNWRKYGQKPIKGCEYPRSYYKCTHANCPVKKKVERSS-DGQITQIIYKGQHDHE 257
                     8****************************************.***************8 PP
2WRKY105.13.7e-33343401159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  Csa01g001480.1 343 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDAKAVITTYEGKHNHD 401
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-29192259IPR003657WRKY domain
SuperFamilySSF1182901.7E-25198259IPR003657WRKY domain
SMARTSM007742.0E-35200258IPR003657WRKY domain
PfamPF031065.4E-25201256IPR003657WRKY domain
PROSITE profilePS5081124.306201259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-36328403IPR003657WRKY domain
SuperFamilySSF1182904.18E-29335403IPR003657WRKY domain
PROSITE profilePS5081137.734338403IPR003657WRKY domain
SMARTSM007743.8E-38343402IPR003657WRKY domain
PfamPF031061.6E-25344401IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAVEDDVSSI RTTTLVAPTR PTITVPQRHP AIETAAYFFG GGDGLSLSPG PLSFVSSLFV  60
DSFPDVLTPD NQRTTSFSQL LAGAMSVSPG AGGGGRSTAG MFTGGGPMFT IPSGISPSSL  120
LTSPMFFPPQ SPVQTGFVHP QPQRQDTFSH HMPTSTSTTI HGIGRQSFEV SQADQRARNH  180
HNNQANNNRS YNVVNVDKPA DDGYNWRKYG QKPIKGCEYP RSYYKCTHAN CPVKKKVERS  240
SDGQITQIIY KGQHDHERPQ NRRGGGGRDS VEVGDIHFVG GVGHMIESSD DSGYGKDHND  300
DNNDDDDDLP GSKIRKIDGV STTHRTVTEP KIIVQTRSEV DLLDDGYRWR KYGQKVVKGN  360
PHPRSYYKCT TANCTVRKHV ERASTDAKAV ITTYEGKHNH DVPAARNGTT AATAAAAGTS  420
DQHRMRSMSG NNMQQHMSFV GNNNNSSGQS PVLLRLKEEK ITI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38201404878Probable WRKY transcription factor 4
2lex_A2e-38201404878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g001480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432103.10.0PREDICTED: probable WRKY transcription factor 58
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLR0HLE10.0R0HLE1_9BRAS; Uncharacterized protein
STRINGXP_010432103.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.10.0WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]