PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g004890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21523 Da    PI: 9.7665
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g004890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.28e-171463150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+++n+  r + fskR+ gi+KK +EL  +Cd+eva+++fs+ gk y+++
  Csa01g004890.1 14 KKVDNYGDRMIAFSKRKGGIFKKLNELVSMCDVEVAILVFSQAGKPYTFA 63
                    578999******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-19665IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-21684IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.862666IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-16828IPR002100Transcription factor, MADS-box
PfamPF003192.3E-181662IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRKTKGKQK IEMKKVDNYG DRMIAFSKRK GGIFKKLNEL VSMCDVEVAI LVFSQAGKPY  60
TFAFPSINEV AARLKNPSGQ ELFAKGHTGL LVEAYKKQRI HDDIVKMEAL EEELALDLDK  120
LKEVKKSRKE KKLDKMWWNI PEEGLSMKDM QRRHQALVEL HEMFFPLMVK DGGSSSSGSL  180
GCDHSGGSAS D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g004890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417570.11e-139PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLD7L2162e-83D7L216_ARALL; MADS-box family protein
STRINGXP_010417570.11e-138(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-61AGAMOUS-like 57