PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g005130.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 403aa MW: 44770 Da PI: 6.8063

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g005130.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.5e-33	204	258	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ Csa01g005130.1 204 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 258 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.805	201	261	IPR017930	Myb domain
SuperFamily	SSF46689	3.76E-17	202	258	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-30	203	260	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	204	258	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-11	206	257	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-22	292	339	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MNNNPVPCQA FPLVSGGSSG GNSFSSSSGF CNGAYVSSSS QARPPVSTVL RSRTTVAHVS 60 EGGQRQDTQS LQVINQPQEQ RNMPWSSDQL QGFFDFPVPV PQAESSRAMV SSKEVQSKSE 120 WPDWADQLMS DDWPELLGDP NALNLDSKIP TPSSDMARQE IVLNNQHEVD PSMDPFNNKN 180 SPASSMTMDP FNAKNSPASS MTSKQRMRWT PELHEAFVEA VNQLGGSERA TPKAVLKLIN 240 SPGLTIYHVK SHLQKYRTAR YKPDLSENKE EPPMKNLKTI EDIKSLDLKT SIEITEALRL 300 QMKVQKQLHE QLEIQRSLQL RIEEQGRYLQ MMIEKQQKMQ ESSSMPEAKG SAPSQNPSQV 360 FLPNRATNSE TSTITQKLQI GSNTMSQTES ASGSNRKRVR ED*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MNNNPVPCQA FPLVSGGSSG GNSFSSSSGF CNGAYVSSSS QARPPVSTVL RSRTTVAHVS  60
EGGQRQDTQS LQVINQPQEQ RNMPWSSDQL QGFFDFPVPV PQAESSRAMV SSKEVQSKSE  120
WPDWADQLMS DDWPELLGDP NALNLDSKIP TPSSDMARQE IVLNNQHEVD PSMDPFNNKN  180
SPASSMTMDP FNAKNSPASS MTSKQRMRWT PELHEAFVEA VNQLGGSERA TPKAVLKLIN  240
SPGLTIYHVK SHLQKYRTAR YKPDLSENKE EPPMKNLKTI EDIKSLDLKT SIEITEALRL  300
QMKVQKQLHE QLEIQRSLQL RIEEQGRYLQ MMIEKQQKMQ ESSSMPEAKG SAPSQNPSQV  360
FLPNRATNSE TSTITQKLQI GSNTMSQTES ASGSNRKRVR ED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-28	204	262	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-28	204	262	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-28	204	262	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-28	204	262	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-28	204	262	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-28	204	262	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-28	204	262	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-28	204	262	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g005130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118630	0.0	AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11.
GenBank	BT005352	0.0	BT005352.1 Arabidopsis thaliana At3g04445 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010414952.1	0.0	PREDICTED: myb family transcription factor PHL13-like
Refseq	XP_010415014.1	0.0	PREDICTED: myb family transcription factor PHL13-like
Refseq	XP_019099837.1	0.0	PREDICTED: myb family transcription factor PHL13-like
Swissprot	F4J3P7	0.0	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	A0A178VHS9	0.0	A0A178VHS9_ARATH; Uncharacterized protein
STRING	XP_010414952.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.2	0.0	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]