PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g005680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 452aa    MW: 49358.7 Da    PI: 4.5176
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g005680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.21e-37137235298
          DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                     lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+k
  Csa01g005680.1 137 LFQRLWTDEDEIELLRGFLDYmTTHRGSSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRK 231
                     79*******************888999999999************************************************************** PP

          DUF573  95 iWgs 98 
                     iW++
  Csa01g005680.1 232 IWNQ 235
                     **85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-34138234IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MTSDHRDAVF SLESPDLEEG GVGDGGESDT DEDLRENDDV DVVIPETNEA EAEDDDPEEE  60
ELNSPSTSSL AMVSTISATA VVSGTPTTNT STGAVTVALP AGSAVPVSVI PVDSDPKWHR  120
MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTT HRGSSSHPPD TAPFYEQIKS  180
KLQLEFNKNQ LVEKLRRLKK KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII  240
GFEDNNVMDF DETSNHHNTN GNYSTFNSPS SNPELDSENG VEKKLTMSSS SGSRKRSRSR  300
IGKIEEDNKP IIAPFDGQIP NAGSNVNLNE TAAAISMGGN LGGLIEETVK NCVSPVIMEL  360
MNGTTSVMMA AMGGGFPSSG GGGFGSLSPM FTRPLNFGFG VEGGGGNKAV ADERWRKQQI  420
LELEVYSRRL ELVQEQIRTT LNELKTMPSG V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g005680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936010.0AB493601.1 Arabidopsis thaliana At3g04930 mRNA for hypothetical protein, partial cds, clone: RAAt3g04930.
GenBankAC0094650.0AC009465.7 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420228.10.0PREDICTED: probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLR0I2K60.0R0I2K6_9BRAS; Uncharacterized protein
STRINGXP_010420228.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.10.0DNA-binding storekeeper protein-related transcriptional regulator