PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g007230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 179aa    MW: 20160.2 Da    PI: 4.1135
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g007230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.5e-1922107598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         ++ +s+ l++p ++ e+     + +kt +l+ + g+ W+v +  + +++++++++GW +Fv +n+Lk+g+f+ F +dg   +++ v++f 
  Csa01g007230.1  22 Y--LSHYSSDSLMIPVSYYEHLP--RPLPKTAILMGTGGKIWKVAM--KSRQEQVYFERGWTNFVADNDLKDGEFLSFVFDG--YRRYEVSIFG 107
                     4..56667788********5555..55999****************..999999*************************876..4445777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2314111IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-1916106No hitNo description
Gene3DG3DSA:2.40.330.102.0E-2116111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.94416109IPR003340B3 DNA binding domain
SMARTSM010191.2E-2118109IPR003340B3 DNA binding domain
PfamPF023621.5E-1519106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MASGDVLPRF FSVYFPRFFS VYLSHYSSDS LMIPVSYYEH LPRPLPKTAI LMGTGGKIWK  60
VAMKSRQEQV YFERGWTNFV ADNDLKDGEF LSFVFDGYRR YEVSIFGHGG CKEIRAAVEV  120
EEISDGSESE NNEGSLESVI LEEEEEINDA DQTKSDPDYS PDSPDTTTIS VESAEVFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-231711110104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g007230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436894.11e-129PREDICTED: B3 domain-containing protein At3g06220-like
SwissprotQ1PES78e-66Y3622_ARATH; B3 domain-containing protein At3g06220
SwissprotQ9M8K29e-65REM21_ARATH; B3 domain-containing protein REM21
TrEMBLD7L4S81e-64D7L4S8_ARALL; Transcriptional factor B3 family protein
TrEMBLR0H1D42e-66R0H1D4_9BRAS; Uncharacterized protein
STRINGXP_010436894.11e-128(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-58B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]