PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g007780.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 138aa    MW: 14749.9 Da    PI: 10.4469
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g007780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-173367135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ Cgt kTplWR+gp g+k+LCnaCG+++ kk++
  Csa01g007780.1 33 CAICGTNKTPLWRSGPAGPKSLCNACGIRNTKKRR 67
                    999*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-112777IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.2022760IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-132778No hitNo description
Gene3DG3DSA:3.30.50.101.1E-142778IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.36E-123268No hitNo description
PfamPF003201.6E-153367IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403358IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MGTTSVDSIE EHSSSSSSNS NGGGISSNEK KSCAICGTNK TPLWRSGPAG PKSLCNACGI  60
RNTKKRRTVI SNRSEDKMKM KMKKKNPKLG DSLKQRLMEL GREVMMQRST TAGNKLGEDE  120
QAAVLLMALS YASSVYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g007780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0639262e-88AY063926.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds.
GenBankAY0845252e-88AY084525.1 Arabidopsis thaliana clone 110655 mRNA, complete sequence.
GenBankAY0912502e-88AY091250.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444366.16e-96PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG106e-66GAT15_ARATH; GATA transcription factor 15
TrEMBLD7L5Z21e-63D7L5Z2_ARALL; Uncharacterized protein
STRINGXP_010444297.12e-95(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-58GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]