PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g010390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 283aa    MW: 31065 Da    PI: 8.4277
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g010390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-144387147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
   Csa01g010390.1 43 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 87
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-173793IPR009057Homeodomain-like
PROSITE profilePS5129416.2913892IPR017930Myb domain
TIGRFAMsTIGR015578.1E-194190IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.5E-74193IPR009057Homeodomain-like
SMARTSM007171.1E-114290IPR001005SANT/Myb domain
PfamPF002496.5E-124387IPR001005SANT/Myb domain
CDDcd001671.96E-94588No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSSSPSRNPT TAEAPPSTST DAVAAESGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL  60
FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV PPPRPKRKAA HPYPQKASKN  120
AQMALQGSTS FTTRNSDMPG YTLWDDASML LNRVISPQPE LANLYGIEAN IGSKGILNVS  180
SPSTSAVGSS SRRTVSGSEI VRKSKQPPVL HAVPDFAEVY NFIGSVFDPE TIGHVEKLKE  240
MDPINFETVL LLMRNLTVNL SNPDFESASD CNNTSEDSPL II*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g010390.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372130.0AJ937213.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like5 (lcl5 gene), variant 1.
GenBankAY5503070.0AY550307.1 Arabidopsis thaliana MYB transcription factor (At3g09600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474487.10.0PREDICTED: protein REVEILLE 8-like
SwissprotQ8RWU31e-173RVE8_ARATH; Protein REVEILLE 8
TrEMBLR0G6D60.0R0G6D6_9BRAS; Uncharacterized protein
STRINGXP_010474487.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93032633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.21e-148MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Fogelmark K,Troein C
    Rethinking transcriptional activation in the Arabidopsis circadian clock.
    PLoS Comput. Biol., 2014. 10(7): p. e1003705
    [PMID:25033214]
  4. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  5. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]